Triplophysa rosa: 130567308
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Entry
130567308 CDS
T09216
Symbol
pdcd6ip
Name
(RefSeq) programmed cell death 6-interacting protein isoform X1
KO
K12200
programmed cell death 6-interacting protein
Organism
tros
Triplophysa rosa
Pathway
tros03250
Viral life cycle - HIV-1
tros03272
Virion - Hepatitis viruses
tros04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130567308 (pdcd6ip)
03272 Virion - Hepatitis viruses
130567308 (pdcd6ip)
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
130567308 (pdcd6ip)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tros04131
]
130567308 (pdcd6ip)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tros04147
]
130567308 (pdcd6ip)
Membrane trafficking [BR:
tros04131
]
Endosome - Lysosome transport
Endosomal sorting complexes required for transport (ESCRT)
ESCRT associated proteins
130567308 (pdcd6ip)
Exosome [BR:
tros04147
]
Exosomal proteins
Proteins found in most exosomes
130567308 (pdcd6ip)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRO1
ALIX_LYPXL_bnd
ORF6N
COG3_N
Motif
Other DBs
NCBI-GeneID:
130567308
NCBI-ProteinID:
XP_057211297
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Position
LG16:complement(9261376..9269437)
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AA seq
870 aa
AA seq
DB search
MATFISVPLKKSSEVDLVKPLWKFVTATYPPGEEQAEYLRAVEEVNKLRKSALGRPLDKH
ESSLEILLRYYDQLCSIEPKFPFPELCLTFTWRDAFDKGSLFGGSVKLALASIGYEKTCV
LFNVGALASQIAAEQNLDNDEGLKAAAKFYQLASGAFAHIKDTVLSALNREPTMDISPET
VGTLSQIMLSQAQEVFVLKATADKMKDAIIAKLANQAADYYGDAFKQCQYKENLPKYFYF
QEVLPVLAAKHCMMQATAELHQSTLANQKKKFGEEIARLQHATELVKTAASRYDEYVNVK
DLSDKINRALTAAKKDNDFIYHDRVPEVKDLEHIGKASLVKATAVQTPLSQKFTDLFEKM
VPMAVQQSVSTANSRKADTVNRLIGSMREATNLCNGVLASLNLPAALEDLSGEAVPQSIL
EKSRAVVQQGGLQSIEQLIKDLPELLTRNREILDESLKMLDGEETTDNELRAKFNQRWSR
TPSGDLYKPLRAEGTNYRNILDKAVQADQVVKERYNAHCEMIALLCKSESELSAAIPSAN
PAQTLQGSEVVNVLRAQLAQLDEVKREREVMEGEIKSVTFDMTTKFLTALAQDGAINEEV
LTSSELDTRYGSHTQRVQQNLRRQEELLSQIQVSHQEFSALKQSNSEANNREDVLKKLAS
AHDSYIEISSNIREGTKFYNDLTEILLKFQNKCSDIVFARKTERDELLKELQQSIAREPS
APSFSVPSYQSNTPAPASSGPSPAPRTVFNPQQPQGKPQPPARPPPPNIAPQAASTSVPV
NAPMAPSSTNPPPVAPTGPSQAQGPPYPSYQGYPGYYQMPVTYNPYAYGQFNMPYMPYQA
QGQAGYPVGPPAQQPYPYPQQPPQQPYYPQ
NT seq
2613 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgtttatttccgtgccgttaaagaagtcctcggaggtcgacttggtgaaaccg
ctgtggaaatttgtaacggccacgtatccacctggtgaggagcaggcggagtatcttcgg
gccgtagaggaggtcaataagctccgtaaaagtgctctgggaaggccgctggacaaacac
gagagctcgctggaaatcctgctgcgatattatgatcagctctgctcaatcgaacccaaa
tttccttttccagagctatgcctgacattcacatggagagatgcgtttgataaaggttct
ctgtttggtggctcagtcaagcttgccttggcaagtataggctacgagaagacttgcgta
ttatttaatgtgggagcactggctagtcagattgctgctgagcagaatctggacaatgac
gaaggactgaaggctgctgccaagttctaccagctggcgagtggtgcattcgctcacata
aaggatacagtgctatctgcactcaatcgagaacccacaatggacatttccccagagacg
gtgggcacactcagtcagatcatgctcagccaagcacaggaggtcttcgttctcaaagcc
actgctgataaaatgaaggacgccatcattgctaaacttgcgaatcaggctgcagattac
tacggcgatgcttttaagcagtgtcagtacaaagagaatctacctaagtatttttatttc
caggaagtgcttcctgtcctcgccgccaagcactgtatgatgcaggctaccgctgagctc
caccagtcaaccttggccaatcagaagaaaaaatttggagaggagatcgcacggctgcag
catgccacggagctggttaagactgcggcttcccgatacgatgaatatgttaatgtgaaa
gatctgtcagataagattaaccgtgcgctaacagctgcaaagaaagacaacgatttcata
taccatgaccgtgtgccagaggtcaaagacctggagcacatcggcaaagcatctcttgtc
aaagcaactgcagttcagacacctctcagccagaagttcacagatttgttcgagaagatg
gtgccaatggcagtgcagcagtcagtcagcacagccaattccaggaaggccgacacagtg
aacagacttattggcagcatgagagaagcaacaaatctctgcaacggggtgttggcatcc
ctgaatctacccgctgcgctagaggatctgtcaggggaagcagtccctcagtccatcctg
gagaagagtcgtgctgtagttcagcagggtggattacagagcatcgagcagctgattaaa
gatctgcctgagcttctgacgagaaaccgtgagatcctggatgagtccttgaagatgtta
gatggcgaggaaacaacagacaatgaactccgagccaaatttaaccagcgctggagcaga
acaccatcaggagatctttataaaccactcagagcagagggaactaactatcgcaatata
ctggacaaggcggtgcaggccgatcaggtggtgaaagagcgttacaatgcacattgtgaa
atgatcgcattgctctgcaagtcagagagtgagctcagtgctgccataccgtcagccaac
ccggcccaaactctgcagggcagtgaggtggtgaacgtgctaagagctcagctggcacag
ctggatgaggtgaagagagaaagggaagtgatggaaggagagattaagtcagtgaccttt
gacatgactacaaagttcctcaccgcactggctcaagatggagccattaatgaggaagtc
ctgacgtccagtgagctggacactcgctacggttctcacacacagcgcgtccagcagaat
ttacgcagacaggaggagctgctgtcacagatacaggtgtcccatcaagagttctcagca
cttaaacagtctaactctgaggctaataacagagaggatgtgttgaagaagcttgcctca
gcccatgatagctacatagagatcagctccaatatcagagagggcaccaagttctacaat
gatctgacagaaatcttgctgaagtttcaaaataaatgcagcgacatcgttttcgcccgc
aaaaccgagagagatgaactgctcaaggagctgcagcaaagcattgcacgtgagccaagc
gctccatcatttagcgtcccgtcttaccagtccaacacccctgcacctgcctcaagcggc
cctagccctgcacctaggactgtgtttaatccgcagcagcctcagggtaaacctcagccc
ccagctaggccgccacccccaaacatcgccccacaggcggccagcacgtcagttccagta
aacgctccaatggcccctagtagcacgaatcccccacctgtcgcacccaccggaccctca
caggctcaaggaccaccctatccctcttatcaaggctacccagggtattaccagatgcca
gtgacatataacccctatgcatatgggcagtttaatatgccctacatgccctatcaagcc
caggggcaggctggataccccgtagggcctcctgcgcagcagccctacccctatccacaa
caaccaccacagcaaccctattacccccaatag
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