KEGG   Triplophysa rosa: 130567414
Entry
130567414         CDS       T09216                                 
Symbol
snrnp40
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein
  KO
K12857  Prp8 binding protein
Organism
tros  Triplophysa rosa
Pathway
tros03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tros00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130567414 (snrnp40)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tros03041]
    130567414 (snrnp40)
Spliceosome [BR:tros03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    130567414 (snrnp40)
 Complex C
   U5 SnRNP specific factors
    130567414 (snrnp40)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_TEP1_2nd WDR55 EIF3I Beta-prop_EML_2 Beta-prop_CAF1B_HIR1 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_EML NBCH_WD40 Beta-prop_SCAP ANAPC4_WD40 Beta-prop_SPT8 WDR90_beta-prop_4th Beta-prop_IFT122_1st Beta-prop_EIPR1 WD40_MABP1-WDR62_1st Beta-prop_RIG_2nd Beta-prop_DCAF4 Beta-prop_WDR19_1st WD40_RFWD3 Beta-prop_IFT140_1st Beta-prop_Vps41 Beta-prop_WDR75_2nd eIF2A Beta-prop_WDR35_TULP_N Cytochrom_D1 Beta-prop_Nup120_160 WD40_like
Other DBs
NCBI-GeneID: 130567414
NCBI-ProteinID: XP_057211475
LinkDB
Position
LG16:complement(9218215..9222107)
AA seq 347 aa
MIEPKKRAADMAVVPAGVKRPRTELVAAAQSQQLSAMGPPRSSSLHAPIMLLSGHDGEVY
GCKFHPNGATLASSGFDRLILLWNVYGDCENYATLKGHTGAVMELHYNTDGSLLFSASTD
KTVCVWDSETGERVKRLKGHTSFVNSCFPARRGPQLACTGSDDGTVKLWDIRKKASVHTF
QNTYQVLSVTFNDTSDQVISGGIDNDIKVWDLRQNKLIYSMQGHGDSVTGLSLSSDGSYL
LSNSMDNSVRVWDIRPFAPKERCVKIFQGNVHNFEKNLLRCSWSPDGSKIAAGSADRFVY
IWDTTSRRILYKLPGHAGSVNEVVFHPEEPIVLSGSSDKRLYIGEIQ
NT seq 1044 nt   +upstreamnt  +downstreamnt
atgatcgaaccgaagaagcgagcggctgatatggcagttgttccggccggtgtgaagaga
ccacggaccgagctggtggccgcagcgcagtcccagcagctctctgctatgggcccccca
cgaagctccagtctgcatgctcctataatgttgctctctggtcatgatggagaagtttat
ggctgcaagtttcatcccaatggagctacgttagcatcctcaggatttgaccgcctcatc
ttgttatggaacgtatatggagactgtgagaattacgctacacttaaaggccacactgga
gctgtgatggagctgcattacaacacagatggaagtctgctcttttcagctagtacggat
aagacggtgtgtgtgtgggacagtgaaacaggggagcgtgtgaagcgtctgaaaggtcac
acgtcctttgtgaactcatgttttcctgcacggcgcggcccacagctggcctgcacaggc
agtgatgatggaactgtgaagttgtgggacatcaggaagaaggcctctgttcacacattc
cagaacacctatcaagttcttagtgtgacattcaatgacaccagtgaccaggtcatctca
ggaggcatagacaatgacatcaaggtgtgggacctgaggcaaaacaaactgatttacagt
atgcagggtcatggagactctgttacaggtctcagtctcagctcagatgggtcttacttg
ctttccaattcaatggacaacagcgtgcgtgtctgggatatccgtccatttgcaccaaaa
gagaggtgtgtgaagatctttcagggaaatgtccataactttgagaagaatcttctcaga
tgctcatggtctcctgatggcagtaagattgctgcaggttctgctgacaggtttgtgtat
atttgggacacaacatcccgcaggatcttgtataaactccctggtcatgctggatctgtc
aacgaggtggtttttcatccagaagaacccattgtgctttctggatccagtgataagcgc
ctttacatcggagagattcaataa

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