Triplophysa rosa: 130567952
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Entry
130567952 CDS
T09216
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
tros
Triplophysa rosa
Pathway
tros03082
ATP-dependent chromatin remodeling
tros03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130567952 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130567952 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tros01009
]
130567952 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tros03021
]
130567952 (smarcb1a)
03036 Chromosome and associated proteins [BR:
tros03036
]
130567952 (smarcb1a)
Protein phosphatases and associated proteins [BR:
tros01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130567952 (smarcb1a)
Transcription machinery [BR:
tros03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130567952 (smarcb1a)
SWI/SNF complex
130567952 (smarcb1a)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130567952 (smarcb1a)
PBAF complex
130567952 (smarcb1a)
SWI/SNF complex
130567952 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
130567952
NCBI-ProteinID:
XP_057212493
LinkDB
All DBs
Position
LG17:complement(10240987..10245493)
Genome browser
AA seq
372 aa
AA seq
DB search
MALSKTYGQKPIKFQLEDGEFYMIGSEVGNFLRMFRGSLYKRYPSLSRRLATVEERKKIV
ASSHDHGYTTLATSVTLLKASEVEEIFDGHDEKYKAVSISTEPPAYLREQKAKRNSQWVP
TLPNSSHHLDAVPCSTTINRNRLGRDKKRTFPLCFDDHDPAVIHENATQPEILVPIRLDM
EIDGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLSPLTFVPAIASAIRQQIESYPTDSI
LDEQMDQRVIIKLNIHVGNISLVDQFEWDMSEKENSPEKFALKLCSELGLGGEFVTTIAY
SIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNTR
RMRRLANTAPAW
NT seq
1119 nt
NT seq
+upstream
nt +downstream
nt
atggctttgagcaaaacatacggacagaaacccattaaatttcagctggaggatggggaa
ttttacatgattggatcagaggtggggaatttcttgcgtatgttcaggggatctttatac
aagcggtacccatcactttcaagaagactagcaacagtagaggagagaaagaaaattgta
gcatcatctcacgatcacggttacaccactttagccaccagtgtgacgctgctgaaggcc
tcagaagtagaagagatatttgatggacatgacgagaagtacaaagctgtgtccatcagc
actgagcctccagcctatctccgggagcagaaagccaaaagaaacagccagtgggtgccc
actcttcccaacagttcccatcacttggatgctgtgccgtgctccaccacgatcaaccgc
aaccgactgggtcgtgacaaaaagaggaccttccccctctgctttgacgatcatgatcct
gctgtcatccatgagaatgccactcagcctgagatcctggtgcccatccgactggacatg
gagattgacgggcagaagctgcgtgatgctttcacctggaacatgaacgagaagctcatg
acaccagagatgtttgctgaaatcctgtgtgatgatctggacctgagccccctgaccttt
gttcctgccattgcttcagccattagacagcagatagaatcctaccctacagacagtata
ctggatgagcagatggaccagagagtcatcatcaagttaaatatacatgttgggaacata
tctctggttgatcagtttgaatgggacatgtctgagaaggagaattctcctgagaagttt
gccctgaagttgtgctctgagctgggccttgggggagagtttgtcaccactattgcatat
agcattcgtggccagcttagctggcatcagaggacgtatgcctttagtgagaatcctctc
cccacggtagagattgctatcagaaacacaggtgatgctgaccagtggtgcccattactg
gagactctgacagatgctgagatggagaagaagatcagggaccaggacagaaacacaagg
cgaatgaggcgacttgcaaacacagccccagcatggtga
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