Triplophysa rosa: 130568350
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Entry
130568350 CDS
T09216
Symbol
col2a1a
Name
(RefSeq) collagen, type II, alpha 1a isoform X1
KO
K19719
collagen type II alpha
Organism
tros
Triplophysa rosa
Pathway
tros04510
Focal adhesion
tros04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130568350 (col2a1a)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130568350 (col2a1a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130568350 (col2a1a)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130568350 (col2a1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Frataxin_Cyay
SNARE
Motif
Other DBs
NCBI-GeneID:
130568350
NCBI-ProteinID:
XP_057213130
LinkDB
All DBs
Position
LG17:complement(15592377..15612469)
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AA seq
1490 aa
AA seq
DB search
MFRLADSRTLLLLVATHCVLVSLVRCQQEDDQEELGGCIQDGQQYADRAVWKPEACRVCV
CDSGAVLCDEVICEDLSDCANPIIPPGECCPICLAETDEPIGSISAKGQKGEPGDIADVV
GPKGPAGPMGPPGEQGPRGERGSKGEKGNVGPRGRDGEPGTPGNPGPPGPPGPNGTPGLG
GNFAAQMAGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPSGAPGPQGFQGNPGETGEPGPG
GAIGPRGPSGPPGKSGSDGEAGKPGKGGERGPTGPQGARGFPGTPGLPGIKGHRGHPGLD
GAKGESGAAGAKGESGTAGENGAPGPMGPRGLPGERGRPGASGAAGARGNDGLPGPAGPP
GPVGPAGAPGFPGSPGAKGEAGPTGARGPEGQQGQRGEAGTPGSPGPAGASGNPGTDGIP
GAKGSAGGAGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGERGVA
GPLGPPGPSGEEGKRGPRGEPGSAGPLGPPGERGAPGNRGFPGQDGLAGAKGAPGDRGIP
GLSGPKGATGDPGRTGEPGLPGARGLTGRPGDGGPQGKVGPSGAPGEDGRPGPPGPIGTR
GQPGVMGFPGPKGANGEPGKPGEKGLLGRTGLRGLPGKDGETGPSGPPGPHGAVGERGEQ
GQPGPSGFQGLPGPSGPPGESGKPGDQGLPGEGGAAGITGPRGERGFPGERGSAGPQGLQ
GPRGLPGTAGTDGPKGAIGPAGASGAQGSHGLQGMPGERGAVGISGAKGDRGDSGEKGPE
GASGKDGSRGLTGPIGPPGPVGPNGAKGETGTIGPIGSPGVRGAPGDRGEIGAPGPAGFA
GPPGADGQPGIKGEHGESGQKGDAGASGPQGPSGAPGPLGPTGIAGPKGARGAQGAPGAT
GFPGAAGRVGTPGPNGNPGAAGPAGPAGKDGPKGIRGDAGPPGRAGDAGLRGPSGSPGEK
GEPGEDGPPGPDGPSGPSGLAGQRGIVGLPGQRGERGFAGLPGPSGEPGKQGAPGSSGDR
GPPGPVGPPGLTGPAGEPGREGNAGSDGPPGRDGAAGVKGERGNSGPIGAPGAPGSPGAP
GSVGPVGKQGDRGENGPQGPAGPPGSAGARGMVGPQGPRGDKGEAGEAGERGQKGHRGFT
GLQGLPGPPGAPGDQGAAGPAGPSGAKGLAGPVGPAGKDGSNGQPGPIGPPGPRGRSGET
GPVGPPGNTGPPGPPGPPGPGIDMSAFAGLAHTEKGPDPLRYMRADEASSSLRQHDVEVG
ATLKSINSQIEDIRTPDGSRKNPTRSCRDLKLCHPEWKSGDYWVDPNLGSSADAIKVYCN
METGETCLKPSTPKIPRKNWWTSKSKTHKHIWFGESMNGGFHFSYAENGQTSTANIQMNF
LRLLSTEATQTITYHCKNSVAYMDQATGNLKKALLLQGSNDVEIRAEGNSRFTYGVLEDG
CKKHTGQWAKTVIEYKTQKTSRLPIVDIAPMDIGGEDQEFGVDIGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagattagcggattcacggactctcctgctacttgtagcaacgcattgcgttttg
gtatcccttgtgagatgtcagcaagaagatgaccaagaagagttaggcggttgcatccaa
gatggccagcagtacgcagaccgtgcggtatggaagccagaggcgtgccgtgtctgtgtg
tgcgactcgggggcggtgctgtgtgacgaggttatctgtgaggacctgagcgactgtgcc
aatcccatcattccacctggagagtgctgtcccatctgcctagctgaaaccgacgagcct
atcgggtcgattagtgcaaagggacagaaaggagaaccaggcgatattgcagatgttgta
ggaccaaaaggacccgctggcccaatgggacccccaggggagcagggaccacgtggcgaa
agaggatctaagggtgagaagggaaatgttggccccagaggaagagatggcgaacctggt
acacctggtaaccctggaccacctgggcccccaggacctaatggcacccctggacttgga
ggaaactttgctgctcagatggctggtggttttgatgagaaggccggaggtgctcagatg
ggtgtgatgcagggaccaatgggtccgatgggcccccgtggacctcccggcccctctgga
gcacctggcccacagggtttccaaggcaaccctggagagactggtgaacccggccctgga
ggtgccattggaccccgtggaccgtctgggcccccaggaaaatctggaagtgatggtgaa
gctggtaagcctggcaagggcggtgagcgcggacccacagggcctcagggagctcgtgga
ttccctggaactcctggccttcctggcatcaagggacacagaggacacccaggtcttgat
ggagctaaaggagagagtggtgctgctggtgctaagggtgaatcaggtaccgctggtgag
aatggtgctcctggaccaatgggtccacgtggtctgcctggtgagagaggtcgtcctgga
gcttctggtgctgctggtgcccgtggtaatgatggtctgcctggtcctgctggtccacct
ggccctgttggtcctgctggtgctccaggtttcccaggatcccctggtgctaagggagaa
gctggtcccactggtgctcggggacccgagggccaacaaggacaacgtggagaggctggt
acacctggatcacctggacctgctggtgcttctggtaaccctggtactgatggtattcca
ggagccaaagggtctgctggaggtgctggtattgctggtgccccaggtttcccaggaccc
cgtggcccaccaggacctcagggagccactggacctcttgggcctaaaggacaatctggt
gatcctggcatcccaggattcaaaggcgaagctggacccaagggagagcgtggtgttgct
ggacctctaggtcctcctgggccctcaggagaggaaggcaaaaggggacccagaggagag
cccggttctgctggacctcttggacctcctggagagagaggagctccaggtaaccgtgga
ttccctggtcaggatggtttagctggagcaaagggtgcacctggtgaccgtggtattcct
ggtttgagtggacccaaaggagcaactggagatcctggtcgcacaggcgagcctggtctt
cctggagctagaggtctcactggtcgtcctggtgatggtggacctcaaggaaaagttgga
ccaagtggagcccctggtgaagatggacgacctggtccccctggtcctattggaactcgt
ggtcagcctggagtgatgggtttccctggccccaagggagccaatggcgaacctggaaaa
cctggagaaaaaggtcttcttggacgcactggtctgagaggtttgcctggtaaagatgga
gagactggaccttctggtcctcctggccctcatggtgctgtcggtgagagaggagaacaa
ggtcagcctggtccttctggcttccagggtctgccaggtccttctgggccccccggagag
tccggtaaaccaggtgaccagggtcttcctggagagggcggagctgctggaatcactgga
ccaagaggtgaacgtggtttccctggtgagagaggaagtgctggccctcagggacttcag
ggacccaggggtcttccaggaacagccggaactgatggacccaagggtgctattggacct
gctggagcttccggtgctcagggttctcacggtctgcagggaatgcctggtgagagagga
gctgttggaatctctggagctaaaggtgacagaggtgacagcggagagaaaggacctgaa
ggtgcttctggcaaagatggctctagaggcttgactggtccgattggtccacctggtcct
gttggtcccaatggcgcaaagggtgaaactggtaccattggcccaattggctctcctggt
gtccgtggtgcccctggtgatcgtggtgagattggtgcacctggacctgctggatttgcc
ggacctcctggtgctgatggccagcctggaattaagggagagcacggtgagtcaggacag
aaaggtgatgctggagcatccggaccccagggtccatcaggagcacccggcccactgggc
ccaactggtattgctggacccaagggagcacgtggagcccaaggagcccctggtgccact
ggtttccctggtgctgcaggaagagttggtacacctggccccaatggtaaccctggtgct
gctggtccagccggtcctgctggaaaggatggtcctaagggcatccgcggtgatgctggt
ccccctggaagagctggagatgctggactgcgtggaccttctggttctcctggagagaag
ggagagcctggagaggatggtcctcctggtcctgatggtccttccggtccttctggtctt
gctggtcagcgtggtattgttggtctgcctggtcaacgtggtgaaagaggtttcgccgga
cttccaggaccctctggagagcctggcaaacagggagctcctggcagttctggtgaccgt
ggacctcctggtcctgttggacctcctggattgactggacctgctggagagcctggacgt
gagggtaatgctggatctgatggtccacctggtagagatggtgctgctggtgtaaagggt
gagcgtggtaactctggcccgattggagctcctggagctcctggttcccctggtgctcct
ggttccgttggcccagttggaaagcagggagacagaggagagaatggcccacaaggacct
gctggaccccctggatctgctggagctagaggcatggttggaccccaaggacctcgtggt
gataagggtgaggctggagaggctggagagagaggacagaaaggacacaggggattcact
ggtctgcagggtcttcctggacctcctggtgctcccggagaccagggtgctgccggacct
gctggaccatctggtgctaagggacttgccggacctgttggacctgctggtaaggatggt
tctaatggtcagcctggacccattggaccacctggacctcgtgggcgttctggagaaact
ggccctgttggtccacctggtaacaccggaccccctggccctcccggtcccccaggccct
ggcattgacatgtctgcctttgccgggttggctcacaccgagaagggacccgatcccctg
cgttatatgcgtgccgacgaggcctccagctctcttagacagcatgatgtagaagtgggt
gccacactcaagtcaatcaacagccagatcgaggacatccgcacccccgatggctcccgt
aagaaccctacccgtagctgccgagacttgaagctgtgccaccctgaatggaagagcggt
gactactgggtcgatcctaaccttggcagcagtgctgatgccatcaaagtgtactgtaac
atggagaccggagagacctgcttgaagcccagcactcccaagatcccacgcaagaactgg
tggaccagcaagagcaagacgcacaagcacatttggttcggcgagagcatgaacggcgga
ttccactttagctatgctgaaaacggccagaccagcaccgccaacatccagatgaacttc
ctgaggctgctgtctactgaggccactcagaccatcacctaccactgcaagaacagcgtg
gcttacatggaccaagccacaggcaacctgaagaaggcccttctcctgcagggatccaac
gacgtggagatcagagcagagggcaacagccgctttacctatggcgtgctggaagatggc
tgcaagaagcacacaggtcagtgggccaagactgtgattgagtacaaaactcagaagaca
tccaggctgcccatcgtggacattgctcccatggacatcggaggagaggatcaggagttc
ggagtggacattggtgcagtctgcttcttgtaa
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integrated database retrieval system
