Triplophysa rosa: 130568550
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Entry
130568550 CDS
T09216
Symbol
hdac6
Name
(RefSeq) histone deacetylase 6 isoform X1
KO
K11407
histone deacetylase 6 [EC:
3.5.1.98
]
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tros01009
]
130568550 (hdac6)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130568550 (hdac6)
04131 Membrane trafficking [BR:
tros04131
]
130568550 (hdac6)
03036 Chromosome and associated proteins [BR:
tros03036
]
130568550 (hdac6)
Enzymes [BR:
tros01000
]
3. Hydrolases
3.5 Acting on carbon-nitrogen bonds, other than peptide bonds
3.5.1 In linear amides
3.5.1.98 histone deacetylase
130568550 (hdac6)
Protein phosphatases and associated proteins [BR:
tros01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130568550 (hdac6)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
130568550 (hdac6)
Membrane trafficking [BR:
tros04131
]
Autophagy
Aggrephagy
Other aggrephagy associated proteins
130568550 (hdac6)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Histone modification proteins
HDACs (histone deacetylases)
Class II HDACs
130568550 (hdac6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Hist_deacetyl
zf-UBP
Motif
Other DBs
NCBI-GeneID:
130568550
NCBI-ProteinID:
XP_057213473
LinkDB
All DBs
Position
LG17:20946481..20956412
Genome browser
AA seq
1097 aa
AA seq
DB search
MDSAPDENGDFKGSSGSPKGTREKRSTRDNSKPSHRKSLQEARRKGRMDRSKAEEEMSGR
LQDLDVRGKTKAAGTGLVYVDAFIRYHCLWDSSHPERPERVAVVMDTLDKEGLLARCVRV
EAKAASEDELLLVHTKEYIELMRSTQNMTEEELKTLADQYDSVYLHPELFASACLAVGSV
LQMVDKVMMSQLRNGFCVVRPPGHHAHVDQMNGYCMFNNLAIAARYAQKRHGAERVLIVD
WDVHHGQGIQYMFEEDPSVLYFSVHRYEDGSFWPHLKESASSSVGSGAGQGYNINVPWNK
TGMEDGDYVAVFQQVLLPVAYEFQPQLVLVAAGFDSVIGDPKGEMRASPRCFSILTHVLK
GIAQGRLVMALEGGYNLESTAEGVCASVRSLLGDPCPHLTSPGTPSESALKSISQTISAL
YPFWKSLQTLEGGPLSDVTPLPAPVCADVKVSSSVTGLVYDQMMMLHHNMWDSHHPELPQ
RISRIFARHEESGLLSRCHRIPTRLATEEELALCHSSEHISTMKNTERMKPRDLHRLGND
YNSIYISNESYKCALMAAGACLNSVQAILTGQVRNGVAIVRPPGHHAEEDKACGFCFFNT
TALTARFAQSITSQSLRVLILDWDVHHGNGTQHIFEADDSVLYISLHRYEDATFFPSSED
ANYDQVGRGKGKGYNVNIPWNAGKMGDAEYMAAFHHVVMPIAREFAPELVLVSAGFDAAR
GDPLGGYQVTPEGYAHLTHMLMSLAAGRVLVILEGGYNLTSISESMSMCTSMLLGDSPPA
LSSLNPPHPSAAVTINNVLRAHAPYWRSLRIQLPESLRLCLPSPKPKGKRTSVGKSKKSP
RQSTPSQSTRQVPQHHASPEASAPPTAAHEQSGLDDLTQGMLALDLYTSASSNPSPTSVP
IGGARRKVKPSAGQMSGSPLKLVSENTKDENGTSVTTDMTSEGSTLKSEATVESGGAGDR
KGACGHTEKSVFELVCGAQDVDGETMFVVDPLSWCPHLESVRPVPAGGVDVFLPCEDCGG
DAENWMCLFCYKVLCGRYVNQHMVTHGQLSGHPLVLSFADLSVWCYACESYVHNKALYEV
KNAAHLLKFGEEMAPFN
NT seq
3294 nt
NT seq
+upstream
nt +downstream
nt
atggattctgcacctgatgaaaatggagacttcaaaggttcctctggatctccaaaaggg
acacgagagaagcgaagcactagagataacagcaagccgagccataggaagagcctgcag
gaggcacggaggaagggaagaatggatcggagtaaagcagaggaggagatgagcggtcgg
ctccaagacctggatgtccgcgggaagactaaagcggcaggaaccggtctcgtctatgtg
gacgcgttcattcgctatcactgcctctgggacagcagtcatccagagcgtccagagaga
gtggctgttgtaatggacacgctggataaagagggtttgctggcacgctgcgtacgggtc
gaggccaaagctgcatcagaggacgagctcttactcgttcatacgaaagagtacatcgag
ctgatgagatccacacagaatatgacagaagaagaactgaagacgcttgctgatcaatat
gactctgtctatctccatcctgaacttttcgcttcggcttgtttggcggtgggatcggtt
ctccaaatggtggataaggtgatgatgtcacagctgcgtaacgggttctgtgtcgtcagg
cctcctggtcaccacgctcacgtagatcagatgaacggctactgtatgttcaataacctg
gctatagcggcacgatacgctcagaaacggcacggagcggaacgagttctgattgtggat
tgggacgtgcatcacggccagggaatccagtatatgtttgaagaggatcccagtgtgctg
tacttctcagtgcacagatatgaagacggctcgttctggcctcacctcaaagagtctgcg
agcagttctgtaggttcaggagcgggtcagggctacaacatcaacgtaccctggaacaag
acaggaatggaagatggagattacgtggcagttttccagcaggtcctcctgccggtggcg
tacgagtttcagccgcagctggtgttagtggcggcaggctttgactctgtgatcggagac
ccgaagggtgagatgcgagcgagtccacggtgtttctccatcctgactcacgtgctgaaa
ggcatcgctcaggggcgactcgtgatggccctagagggtggatataacctggagtccact
gctgagggtgtttgtgcatctgtgaggtcacttctgggcgacccctgccctcatctgacc
tctcccggtaccccgagtgagagtgcactgaagtccatctcacagaccatctcagccctg
tatccattttggaagagtcttcagacgcttgagggcggtcctctgtctgatgtcacaccc
ctgcccgcaccagtatgtgcagacgtaaaggtttcttcctccgtcaccgggctggtttat
gaccagatgatgatgctccatcacaacatgtgggatagtcatcacccagaactccctcag
agaatctcacgaatctttgcccgtcacgaggagtcgggcctgctgtctcgttgccatcgg
ataccaactcgcttagcaacggaagaagagctggcactatgccacagttcggagcacatc
agcactatgaagaacacagagcgcatgaagcccagagatcttcatcgactggggaacgat
tacaattccatttacatcagtaacgagagctataaatgtgccctgatggccgccggagcg
tgtttgaactccgtacaggccattctcacaggccaggtgagaaacggtgtggctatagtc
cgtcctccaggtcaccatgcagaggaagacaaagcctgtggtttctgtttctttaacacg
actgcgctgacggcacgcttcgcccagagcatcaccagccaatcgctgcgcgtcctcatc
ctcgactgggacgttcatcatggaaacggcacacagcacatctttgaggcggacgacagc
gttctgtacatctccctgcatcgctacgaagacgcaacgttcttccccagctctgaggac
gctaactatgatcaggtgggacgagggaaaggaaaaggttacaatgtcaacatcccctgg
aacgcagggaagatgggagacgccgaatacatggcggctttccatcatgtagtgatgccc
atagccagagagtttgctccggagctggtgctggtgtctgctgggtttgatgcggcacgg
ggcgatccgttaggagggtatcaggtcacacctgagggttacgcccatctcacccacatg
ctaatgagtctagcagccggcagagtgctggtcatactagagggaggatataacctcacc
tccatttctgaatccatgtccatgtgcaccagtatgttactgggagattcgcctcccgct
ctgtccagcctaaaccctcctcaccccagtgctgctgtcaccataaacaatgtcctgcgc
gctcatgccccctactggagatccctgagaatacagctaccagagtctctccgcttgtgt
ttaccatctccaaaacccaaaggcaagcggacgtcagtgggcaaaagtaagaaatctcct
cgccagtccaccccctcccaaagtaccagacaggtaccgcagcatcacgcctcccccgaa
gcctcggctccgcccactgctgcccacgagcagtccggcctcgatgacctcactcagggc
atgctcgctctggatctatacacgagtgcctcatctaaccccagccctacgtcagttccc
attggaggagccagacgtaaggtaaaaccttcagccggacagatgtcaggttcacctcta
aaattggtgtcagagaacaccaaagacgaaaacggcacgagtgtgaccacggacatgaca
tcagagggatctaccctgaaatccgaggccactgtagaatcaggtggtgccggtgaccgt
aaaggagcctgtggtcacacagagaaatcagtgtttgagctggtgtgtggagcccaagat
gtagatggggagacgatgttcgtggtggacccgttgtcatggtgcccacacttggagtcc
gtgcggccggtgcccgcaggtggcgtcgacgtcttcctgccgtgtgaagattgtgggggg
gatgctgagaactggatgtgtctcttttgctacaaggtgctctgcgggcgttatgtaaac
cagcacatggtgacccacggccagctgtcgggtcatcctctggtactgagtttcgctgat
ctttcggtttggtgctatgcctgcgagtcatacgtccacaacaaggcgctctatgaagtc
aaaaacgcggctcatttattgaagtttggagaagagatggctcctttcaactaa
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