Triplophysa rosa: 130568611
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Entry
130568611 CDS
T09216
Symbol
vps13a
Name
(RefSeq) vacuolar protein sorting-associated protein 13A isoform X1
KO
K19525
vacuolar protein sorting-associated protein 13A/C
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tros04131
]
130568611 (vps13a)
Membrane trafficking [BR:
tros04131
]
Endosome - Golgi transport
Rab GTPases and associated proteins
Rab associated proteins
130568611 (vps13a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS13_N
VPS13_M
VPS13_VAB
VPS13_C
ATG2_CAD
RRM_fung
Halogen_Hydrol
Motif
Other DBs
NCBI-GeneID:
130568611
NCBI-ProteinID:
XP_057213555
LinkDB
All DBs
Position
LG17:complement(4617821..4674957)
Genome browser
AA seq
3230 aa
AA seq
DB search
MVFESVVVDVLNRFLGDYVVNLDCSQLSLGIWGGDAILRNLEIKENALSQLDIPFKVRAG
HIGRLELKIPWKNLYTQSVEATLDEVYLLIVPAASIKYDAEKEERQLQEARQRELQRIEE
TKQKAAEKENPKAEKQDTFAEKLVTQVIKNLQVKISNIHVRYEDDVTNPNSPLSFGVSLQ
NLSLQTADQNWNPCLLDEKAKLFFKLVRLDNLFAYWNVNSELYSNHNPDEALRRLKHSVA
VKNTIPQDYHFIFRPISAHAKLRMNPRSDVDFSSPKVDLVVNLPEVAVELSRPQYVSILE
LLGSVDMMTRNLPYRKYRPNVPVHTNAYQWWRYVITGVLEVNIKPSLHMWSWQHIRSHRQ
LVKKYRDLYKNKITSKKPADALLKKLEETERTLDIFNITMARQQAEMEASKAGLRIYRPG
VKVEEEQSEGWFGWMWNWSGDGGAPSKDIKTGGFDELMTPAEKAKLYAAIGYSETAVNPN
LPKNFENMKMHFQLLNLSLSIKESREKPEMIKLSVIDLIAMLTQRPAAQAIKISAQLSSF
EVSGLPRGQKPPILLSPRCGVGENNKALLNLMFETNPLDGLADQKLRIESQPLEIIYDAM
TVNSMSAFFMPPKDLQLDELTNATLMKLEQFRDRTSTGLMYIIETQKVLDLNIDLMASYV
IVPENGFYDPKHNLAILDLGHFQMSSQSKAGLPQLSANSSTLEDIMSRAYDSFDIQLSSL
QFLYTKAGGDWKRARPLRQSSFHILEPVDLKVVFSRAMVVTDSRMPKFKIFGELPLLSLR
ISDDKVRGVLALLSSIPLPESRPAPPTKAPQVTPKVSKRGNTPQLTPRRPAVDDLRASII
YGSDEELFFDAPSSPVEDLPFFEASSDSLQGSASGKRHSMVLKDPMKNMTEFLLLFEINK
LSVQLCRLSKAQEVSVLHLFIDGLGTELKLRTFDMASNTFLREICLECSEYMDSEDKKVH
LITTLDNTEDDLLTLEYIKADKNAPDFKTAYGNTEQLIKVNFSSLDIHLHTEALLNSINF
LNNLLPPLKKEAQEEQPVLPKEEDEEEEEEAKIEESAVTKKSANKKSKYEDVVNLHIRAD
LNCLKVFIRGEKARISEICIEGLVSEVQMMKKSVEILANLKNIVILDCDKEALYKKAVSI
ADKEVFDFRMVNHVDATEGDAYTDMHIVDTSVSLTVGCIQVIFLNKFLSSILAFVNNFQE
AKNALAEVTAQAAEKAATGVLELAERSTRISLDVDIKAPVVFLPQSSVSHNVIVADLGLV
TVKNHFEIVSSPTHNKIPPVVDIMAVGLSDLKMYRTTFTDGKFKGEIQLLKPVNMDLSIK
RNLSASWYHSIPDIQINAHLKPMSLILSQEDLTIVLKTLSENLSETSDVPQVPSSSEKAD
TVSTKDSQSSGGNTVVIAAVVEGQKTGKLKNTLKVDFKFDSMTLVLYSPNINEICVPDSR
DESLRLAEFTLGTISTAVHMYSDSSMKASLKLTNCLLDDKRQRVKIITSRMMAMHPGRED
NVMVDVKYRQGRDSTILDTVIQDFYLCASMEFLLTVADIFLKAMADGFSGPPKSNKQSAS
SSKDTAVPAQPVVAKTEMNLVVKNPEIIFVADLTRAEAPALVVTTQCELAMKNEPSGQSM
TAAISDLKVVACPFLREKRENNVTTVLQPCQVFFQSNQSPTQPQTIELSISSLTLKVSPI
IINTVITIQSALSPAAETPEELESPVPHDLWERRNLRDLKLWFLEEEGEEDTQSVAPLIP
QGESLKMNIQSICVTLEAGVGHRTMPMLLAKSSFHGDVKNWTTLINLHCHLDLEVNYYNE
MMGLWEPLLEPLDDEAKDGFRPWTLSLKMKKKPVMTSGVSDEVDGSVPDYKTVISFASKD
QLNITLSKCGLHMLSNLGTAFAEAAKQTAECIQTDQAPFVVKNRLGLAVSVQHSEVFTPI
GKESKQRVVELQDGENLNMDYTVESSDQFSAMTSLSTKNYIQPTPVGHTAASVIPLIKTG
RGMYSVMHFDSGVTRFFVCQIYTVEGSKYVKIRSPFQIINHFSVPFRVYEGSVCLGTSLP
KEEFCVPLGSYRAELSLQPALEGEEDYNRSEGFTYNEVIQNPRECLQKTCYHHGDRTRMM
KVNMIPLPDAVMSHSTEEGFDKPFVLHLWPTVLLRNLLPFPITFNLKSNGDPPVELKEGH
SSQIHTAIMDFSIVELKLIGYLQQDWEGQYNLSSDQDEISFIKFHSLRLDEETETKAELD
IATHVKKEEGQLVVAVHSPYWMVNKTGRLLQYKADDIHRKHPKEYDMPLLFSFKPRNFLQ
NNKIRLMISESELSDDFSIDTVGSYGDVKCKGRQKDYMVGVKIDASSFSLTRLVTFLPFY
MLVNRTKHVIRVCEEGLDQWTEARPGQAAVPFWPERDSKRLRVKVEGCQSSPRAFDFHQP
ENCLLLHLDKTLGGIIVDVNLTEHSAVIRFSDYHDGAAPFLLINHTKDETLQYHQSCRKQ
KDSAWCPDEFLDISLSGGDETQSLCSQAEIDELGPGQAVYYTWAEPTGSRILSWKWGKYK
GELKIEEDQLLDVNKEGKLFVVSFYEGLQRVALFTTDRRVYKLICDSEKMEVAQQEISIL
LQNMGVSLVNNTYSQEVAFIGITSSDVVWETKLKKRSRWKILSGKEAAKLEHRYQEYMET
GPVDSAVIDLENDYQVLFAANGVAMRVLQPFDAPLRRNFLPALKVEYSVSTCQKTYRVQI
NRIQIQNQLPGAIFPFVFYPIKPPKSVRMDSEPKPLADVSIITRAAGHSDILRIKYFKVL
IQEMDLRMDLGFLYAMLELFTPEHSSAFTSEQEVELFEKDIEYLKTELNHVSATDTSPMS
LYEYFHISPIKLHLSFSLSTGGEDGNKKERETEVIPVQSLNLLLKSIGATLTDAQDVLFK
LAFFELTYQFRTTQQLQWEVIRHYSKQAIKQMYVLVLGLDVLGNPFGLIRGLSEGVEAFF
YEPYQGAIQGPEEFVEGMALGVKALVGGAVGGIAGAASRITGAMAKGVAAMTMDEEYQQK
RRETMNKQPSGLREGLARGGKGLVSGFVSGLTGIVTKPIKGAQKEGAAGFFKGVGKGLVG
ALTRPTGGIIDMASSTFQGIKRAAETSQDVESLRPQRFIHEDGVIRPYKEREGIGSQMLQ
SIENGRFAKYRYFAHAKVNESDFLMITKRGIFFVTKGTFGQLTCEWQYLFDEFTEEPMIV
EGRRLRIEAKERVKSVFHAKEFGKIINFKTPELAKWVLAKLEDARESLPK
NT seq
9693 nt
NT seq
+upstream
nt +downstream
nt
atggtgttcgagtcggtggtggtcgatgtcttgaacaggtttctgggggattatgtggtg
aaccttgactgctcgcagctcagccttggcatatggggaggtgatgccatattgagaaac
cttgaaataaaagagaatgccctgagtcaacttgacattccttttaaagtccgggcagga
cacataggccgtttggaattgaaaatcccttggaagaatctgtacactcagtccgtggag
gctacgctggatgaagtctacctgctcatcgtacctgctgctagtataaagtatgatgcg
gagaaagaggagcggcagctgcaggaggcgcggcagagggagctgcagcgcatcgaggag
accaaacagaaagcggcagagaaagagaatccaaaggcagagaagcaagatacatttgct
gaaaaactggtcacacaggtgatcaaaaacctgcaagtgaaaatctccaacatacacgtc
cgttatgaggatgatgtcaccaatcctaattctccgttgtcgtttggagtttccctgcag
aacctcagtctccagacagctgatcagaattggaacccctgtctgctggatgagaaagcc
aagctgttttttaagctcgtgcgcttggacaatctgtttgcttattggaacgtgaattca
gagctctattccaaccacaatcctgatgaagctctgcgacgactaaagcacagcgttgcc
gtcaagaacaccatccctcaggattatcatttcatctttcgtccaatatctgcacatgcc
aagctacggatgaatcctcgctcggatgtggatttctcctcaccgaaagtggatctagtg
gtcaacctgccggaggtggcagttgagctcagccggccgcagtatgtcagcattctggag
ctattgggttcggtggatatgatgacccggaaccttccatacaggaaatatcggccaaat
gtgcctgttcacactaatgcttatcaatggtggcgttatgtgatcacaggggttttggag
gtgaacatcaagcccagccttcacatgtggtcatggcaacacatccgtagccatcggcaa
ctcgtgaagaagtacagagacctctataagaacaagattaccagcaagaaacctgcagat
gctcttctgaaaaagctggaggaaactgaaagaactctggatatattcaacatcacaatg
gcaagacagcaggctgagatggaggcttcaaaggcaggactgcgaatatatcgtcctgga
gtgaaggtggaagaagagcagtcagagggctggtttggctggatgtggaactggtctgga
gacggcggtgcaccaagcaaagacatcaaaacaggaggttttgatgagctgatgacgcca
gcagaaaaagccaaactatacgctgccataggatacagcgagacagccgtcaatcccaac
ctgccaaaaaattttgagaacatgaagatgcattttcagctgctcaacctgtcgctgtct
atcaaagagagccgtgagaagccggagatgatcaaactctccgtcattgatcttatagcc
atgttgacgcagagacctgccgctcaagcaataaagatctctgcacagctgtcatcgttt
gaagtgtccggtcttcctcgaggccagaagccccccattctattgtcaccgcgctgtggg
gtcggggagaataataaggctcttctgaatctcatgtttgagaccaacccgctagacgga
cttgcagaccagaaactacgcatagagtctcagccacttgagataatctacgacgctatg
acagtgaacagtatgtcagcttttttcatgcctccaaaagacctgcagctggatgaactg
accaatgccacgctcatgaagctcgagcagttcagagacaggacctccacaggacttatg
tacatcatagaaactcagaaggttctcgatctgaacatcgacctcatggcttcatatgtc
attgtaccagagaacggcttttatgaccccaaacacaaccttgctattctggacttaggt
cattttcagatgtcgagtcagagcaaagctggattgcctcagttgtctgcgaacagcagc
acattagaggacatcatgtccagagcgtatgacagctttgatatccagctgagcagctta
cagttcctctacaccaaagcaggtggtgactggaagagagctcgtccactgaggcagtcg
tcctttcacatcctggagcctgttgacctgaaggtggtcttcagtcgagctatggtggtg
acagactctagaatgcccaagtttaagattttcggtgagctccctctgctgtctctgcgt
atctcggatgataaagtgcgtggcgtcctggcattgctcagcagcattcctcttccagag
agccgccccgcccctccgacgaaagcaccacaggttacacccaaggtgtccaagcgaggg
aacacgcctcagctcacccccagaagaccagcggtagatgaccttcgtgcatccatcata
tatggctctgatgaggaattgttcttcgacgcccccagttcaccagtagaagatttgccg
ttttttgaggcttcatctgactccctgcaggggtcggcctctggaaagagacactctatg
gtgctgaaggatcccatgaagaatatgaccgagttcctcttgttatttgagatcaataag
ctttctgttcagttgtgtcgcttgtccaaggcacaggaagtgagcgttctccatctgttc
attgacggtttagggacggaactgaaactccgcacctttgatatggcatcaaacactttc
ctacgcgagatctgtctcgagtgttcagagtacatggattctgaggataagaaggttcac
ctcatcacaacgttggacaacactgaagatgatctgctcacgctggaatacatcaaggca
gacaaaaacgcccccgatttcaaaactgcctatggtaacacagagcaactaatcaaggtg
aatttctcctcgctggatatacacctgcacaccgaggcgcttctcaattcaattaacttc
ctaaataacctcctgccacctctcaagaaagaggcacaagaggagcagcctgtcctgcca
aaggaggaagatgaggaggaagaagaggaggctaaaatagaagagtctgctgtcacgaaa
aaatctgccaataagaagtcaaagtatgaggacgtggtgaatttgcacatccgagcagat
ctaaactgtttgaaggtcttcataagaggagagaaagccagaatctctgagatctgcatt
gagggactggtttctgaagttcagatgatgaagaagtcggtggagattctggctaacctg
aagaacattgtaattctggattgtgacaaagaggctctgtacaaaaaggccgtgtccatt
gcagacaaagaggtgtttgattttcgcatggtgaaccatgtggacgcaacagagggagat
gcgtacacggacatgcacattgtggacactagtgtatcactaactgtgggctgcatacaa
gtcattttcctcaacaagtttttgtcttctatactggcattcgttaataattttcaggag
gccaaaaatgctttggcagaagtgacagctcaggcagcagagaaggcagctacaggggtg
ctggagctggcagagagaagcacacggatttctctggatgtggacatcaaagctccggtt
gtctttctcccacaatcctctgtttcacacaatgtcattgtggcagatctgggtttagtg
actgttaagaaccactttgagatcgtctcctctccgacacacaataagatcccacctgtg
gtggatatcatggctgtggggctgagtgatcttaaaatgtacaggaccacattcactgat
ggaaaatttaagggtgagattcaactgctcaaaccagttaatatggacctgtcaatcaaa
cgcaatctgtccgcctcctggtatcatagcatccctgacatacagatcaatgcacatctt
aaaccaatgagtctgatcctgagtcaggaggatctgactatagtattgaaaacgctgagt
gagaatctgtctgagacttcagatgttcctcaagttccatcaagctctgagaaagcagac
actgtctctaccaaagattctcagagctctggagggaacacggttgtgatagcggcagtg
gtggagggtcagaaaacaggcaaactgaagaacactctgaaagtggatttcaagtttgat
tccatgaccttggtcctctacagcccaaatatcaatgagatctgcgtgccagactcgcgt
gacgagagcttgaggttggcagagttcacgctgggcaccatctccaccgcagtgcacatg
tattctgacagctcaatgaaagcttctctcaaactcacaaactgcctgctggacgataag
agacagagagtgaaaattatcacatccaggatgatggccatgcatccgggcagggaagat
aacgttatggtggatgtaaagtacaggcaaggccgggacagcaccattctggacacagtg
attcaggacttctacctgtgcgccagcatggagtttctgctcacggtagctgatatcttt
cttaaagctatggcagacggcttctctggtcctccgaagagcaacaaacagtcagccagt
tcctctaaagacacagcagttcctgctcagccagtggtggccaagactgagatgaacctt
gtggtgaagaatcctgaaataattttcgtggccgacctcacacgcgccgaagccccggct
ctcgtcgtcacgacgcagtgcgagctggccatgaagaacgagcccagcggacagtccatg
acggcggccatatcggatctaaaggtggtggcgtgtccgttcctgagggagaagcgagag
aacaacgtgacgacggtgcttcagccctgtcaggtgttcttccagagcaaccaatcacct
acccaacctcaaaccatcgaactgtccatcagctccctcacgctcaaggtgtctcccatc
atcataaacaccgtcatcaccattcagtcagcgctgagccctgcagccgagaccccggag
gagctggagagccccgtgccacacgatctgtgggaacgtcgcaacctgcgagacctgaag
ctctggttcctggaggaggaaggagaggaagacacccagtctgttgctcctctcattcca
cagggagaatctctcaaaatgaacatccagtccatctgtgtaacgctggaggctggggtg
ggtcatcgcaccatgcccatgcttctggccaaatcctcgtttcacggagacgtgaagaac
tggactacactcattaacctccactgtcacctggacctggaggtgaattattataatgag
atgatgggtttatgggagccacttttggagccgctggatgatgaagccaaagacggcttt
agaccttggactctgtcgcttaagatgaagaagaaaccagttatgacctctggggtgtcc
gatgaggtggacggcagcgtgcctgattataaaaccgtaatcagctttgcaagcaaagac
cagctcaacatcacgctctccaagtgtggcctacacatgctcagtaatctggggacggca
tttgcagaagctgccaagcagaccgctgaatgcattcagaccgaccaagctccgtttgtg
gtgaagaatcgtttgggtttggcagtgtccgtgcagcacagcgaggtgtttacacctatc
ggtaaagagtctaaacagcgtgtcgtggagctccaagatggagagaatctaaatatggac
tacacagttgagtccagcgaccagttctctgccatgaccagcctcagcaccaaaaactac
atacaacccactcctgttggccacactgcagcgagtgtcatcccgctgatcaaaacaggg
cgagggatgtacagcgtcatgcactttgactcaggtgtcacacgcttctttgtctgtcag
atatacaccgtggagggcagcaaatatgtcaagatccgctctcctttccagatcatcaat
catttctccgtgccattccgggtttatgagggatctgtgtgtctgggcacttctctgcct
aaggaggagttctgtgtgccactgggttcctacagagctgagctgagcttgcagcctgca
ctggaaggtgaggaagactacaaccgctcggagggcttcacttacaacgaggtgattcag
aatccaagagagtgtttgcagaaaacctgctatcatcacggagacaggactcggatgatg
aaggtcaacatgattcctcttccagacgctgtgatgtcacacagcaccgaggaggggttt
gacaagcccttcgttctgcacctgtggcccaccgtcctcctccgcaaccttctgccgttc
cccatcaccttcaacttaaagagtaatggagatccccccgttgaactaaaagagggtcac
tcgtcccaaatccatacggccatcatggatttttccattgtggagttgaagctcattggt
tatctgcagcaggattgggaaggccagtataatctcagcagtgatcaggatgagataagc
ttcatcaaattccactcgctgcgattggacgaagaaactgaaaccaaggcggagctagac
atcgccacccatgttaaaaaggaggagggtcagctggtcgtggccgtgcactcgccatat
tggatggtgaataagacgggcaggctgctgcagtataaagcagacgatattcatcgcaaa
cacccgaaggagtatgacatgcctctcctcttctccttcaagccacgcaacttcctgcag
aacaacaagattcgtttaatgatttcggaaagcgagttgtcggacgatttctccattgac
acagttggtagttacggtgatgttaaatgcaaaggaaggcagaaggattacatggttggg
gtgaagatagacgcgtccagcttcagtttgacacggctggtgacgttcctccccttctat
atgctggtgaacagaaccaagcatgtgattcgagtttgcgaggagggtctggatcagtgg
acagaggcccgacccggacaggccgccgttccattctggccagaaagagactcgaagagg
cttcgagtcaaagtcgaaggatgtcagtcatcaccacgagcctttgacttccaccaacca
gagaactgcctcctgctgcacctggacaaaactctgggcggtattatcgttgacgtgaat
ttgacagaacattcggctgtgatacgcttctctgattaccacgacggcgcggctccgttt
ctcctcatcaaccacacaaaagacgagacactgcagtaccaccaaagttgcaggaagcag
aaagattctgcttggtgtccagatgagttcctggatatctctttatcagggggggatgag
actcaatccctctgctctcaggcagaaatcgatgagctgggtccaggtcaggctgtgtac
tacacttgggctgagcccaccggatcacgaatcttgagctggaaatggggcaagtacaaa
ggagaactcaagattgaagaggaccagttgttggacgtgaacaaggagggaaaactgttc
gtcgtctcattttatgaaggcctccaacgtgtggcgctttttaccacagatcgccgcgtc
tacaagctgatttgcgacagtgagaagatggaggtggctcaacaggaaatcagtatcttg
ttacagaacatgggcgtgtcactggtcaacaacacctacagccaggaagtggccttcatt
ggcatcaccagttctgatgtggtatgggagactaaactcaagaagcgcagccgatggaag
attttgagcggtaaagaggctgcgaagttggagcaccgctaccaagagtatatggagaca
ggcccggtggatagcgctgtcatcgacctagagaacgattaccaggtgttatttgctgct
aatggggtggccatgagagtactgcagccctttgatgctcctctcaggaggaactttctg
cccgcactgaaggtggagtacagcgtctccacctgccagaaaacctatagagtccagatc
aacagaattcagatccagaatcagttgcctggagccatcttcccatttgtgttctacccc
atcaaaccacccaagtcggttaggatggactcagaaccgaaaccgctggctgatgtcagc
atcatcacccgagcagccgggcactcggacatcctacgcatcaagtattttaaggtgctg
attcaggaaatggacctacggatggatcttgggttcctgtatgccatgctagagctcttc
actcccgagcactccagtgctttcacgtctgaacaagaggttgagttgtttgagaaggac
attgagtatctgaagacggagttgaatcatgtttcagcgacagacacgtctcccatgagc
ctgtacgagtacttccacatatctcccataaagcttcatttgagtttctctctgagcacc
gggggtgaagacggcaataagaaagagagagagaccgaggtcattcctgttcagtcgctc
aatctgctgctgaagagtatcggagctacgctcactgacgctcaggatgtcctcttcaaa
ctggcattctttgagctgacataccagttccgtaccacccaacagctgcagtgggaggtg
atccgtcattactccaaacaggctatcaagcagatgtacgttctggttttgggtttagac
gtgctcggcaatccattcggactcatccgcggcctgtctgaaggagtcgaggccttcttt
tatgaaccctaccagggggctatccagggcccagaggagtttgtggaagggatggcgctc
ggtgtgaaagctctggttggaggggctgtgggcggcatcgcgggagcagcgtctaggatc
acgggtgcgatggcgaaaggtgttgctgcgatgacgatggatgaggaatatcagcagaag
agaagagaaactatgaacaagcagcccagcggtctccgagaagggctggcgcggggaggg
aaaggactcgtatctgggtttgtgagcggcctcactggaattgtgactaaacccattaaa
ggagctcagaaggaaggggctgccggtttctttaaaggtgtgggaaaaggtttagtcgga
gctctcaccagaccaacaggtggcatcattgacatggccagcagcacatttcagggcatc
aagagagctgcagagacgtctcaggacgtggagagtttacgcccgcagcgtttcattcat
gaggatggagtcattcggccatataaggagagagagggaataggcagtcaaatgcttcag
agtattgaaaacggacggtttgccaaatacagatactttgctcacgctaaggtgaatgag
tcagatttcctgatgattactaaaaggggaatatttttcgtgacaaagggaacgtttggt
cagttgacatgcgaatggcagtatctgtttgatgagttcactgaagagcccatgattgtg
gagggcagaagacttcgcattgaagccaaggaaagagtaaaatctgtgtttcatgccaaa
gagtttggaaagatcatcaatttcaaaactccagaattagcaaagtgggttcttgccaag
cttgaagatgccagggaaagtctgccaaaataa
DBGET
integrated database retrieval system
