Triplophysa rosa: 130568808
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Entry
130568808 CDS
T09216
Symbol
msh2
Name
(RefSeq) DNA mismatch repair protein Msh2
KO
K08735
DNA mismatch repair protein MSH2
Organism
tros
Triplophysa rosa
Pathway
tros03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
130568808 (msh2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tros03400
]
130568808 (msh2)
DNA repair and recombination proteins [BR:
tros03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
130568808 (msh2)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_IV
MutS_II
MutS_I
T3SS_needle_reg
AAA_27
Motif
Other DBs
NCBI-GeneID:
130568808
NCBI-ProteinID:
XP_057213862
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Position
LG18:10469253..10476191
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AA seq
935 aa
AA seq
DB search
MAVQPKQKLSMDSASENVFLKCYFSMPEKPDTTVRIFDRNDYYTVHGKDALFAAKEVFKT
NGVIKYLGTGKNRLEGVVLNKSNFETFVRDLLLIRHYRVEVYRNASKSSKDHDWQLAFKG
SPGNLTQFEEILFGSGGGGPGEAAAGVIGVRLGTGSDGQRVVGVGYVDCTLRKLGVCEFP
DNDQFSNLEALLVQIGPKECVLPGGDAGGDLGKLKQVVQRGGVLLTERKKSEYITKDIVQ
DLNRLLKARKGETVSSAALPEMDRQIGISCLEAVIKYLELLSDEGNFGTFKITTFDLNQY
MRLDHAAVQALNLFQGSSDDKTGTHSLAGLLNKCRTPQGQRLVNQWIKQPLRDKNKIDER
LDLVEAFVEDSDLRKSCQEDLLRRFPDLNRLAKKFQRQSCNLQDCYRVYQAVGQLSGLVL
ALERYSGNHQVLLQAAFISPFNDLISDFCKFQEMIETTLDMNQIEHHEFLVKPSFDPTLS
ELRESMDGLEKAMQAALSSAARELGLEAGKTIKLDSNAQIGYFYRVTCKEEKSLRNNKKF
TTLDVQKNGVRFTNSKLSSLNDEYTKSREEYEEAQNAIVKEIISIASGYVDPVQTLNEVI
AQLDAVVSFAVVTHAAPVPYVRPKILEKGSGRLILKASRHPCVEAQDDVAFIPNDVTFSR
GKEMFHIITGPNMGGKSTYIRQVGVIVLMAQIGCFVPCDEAELSVVDCVLARVGAGDSQI
KGVSTFMAEMLETAAILRSATEDSLIIIDELGRGTSTYDGFGLAWAISEHIATRIKSFCL
FATHFHELTVLAQQVPTVRNLHVTALTTDNTLTMLYKVKPGVCDQSFGIHVAELANFPKH
VIAKAREKAMELEEFQDFSRVEEGSDAGPEAKKRCLEKQEGEKIIEAFLAKIKALPVDGM
TDEAVKKELCKLRAEVIAQNNSFVNAILSHINKVK
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcaacctaaacaaaaactgtccatggacagcgcttctgaaaatgtatttctg
aaatgttatttttctatgcctgaaaaaccagacaccaccgtgaggatatttgatcgaaac
gattactatacggtgcacggaaaagatgcgctttttgcagccaaggaggttttcaagacg
aatggggtcatcaaatacctgggcacaggaaagaacaggctggagggtgtggtcctcaat
aaatcgaattttgaaacatttgtgagggacctgctgttgatcagacactaccgagtggaa
gtttacaggaatgccagtaaaagcagcaaagaccatgactggcagttagctttcaaggga
tctccaggaaacctgacccagtttgaggagattttatttggcagtggtggaggaggacca
ggagaggcagctgctggtgtcattggtgtccgtcttggcactggaagtgatgggcaacgt
gttgttggtgtgggttacgtggactgcaccctcagaaaacttggtgtgtgtgagttcccg
gacaatgatcagttctccaatctggaggctttacttgtgcagatcggacccaaagagtgt
gtgcttcctggaggagatgcaggtggagaccttggaaagctcaaacaggtggtacagcgt
ggtggtgttctgctcacagaaagaaagaaatcagagtatataaccaaagatattgtgcag
gatctgaatcggctactaaaggcccgcaagggagagactgtgtccagtgctgcccttcct
gagatggatagacagattggcatatcttgcttggaagcagtcatcaaatacctggagctc
ctctcagatgagggtaattttggtaccttcaagataaccacctttgatctcaaccagtac
atgcgtttggatcatgctgctgtgcaagccctgaatctcttccagggttcctctgatgat
aaaacagggactcactctctggcaggtcttttaaacaaatgtcgtaccccgcaaggacag
cggcttgtcaaccagtggatcaaacagcctcttagagacaaaaacaaaatagatgagaga
ctagatcttgttgaagcttttgtggaagactctgatctgaggaagagctgtcaagaggat
ctcctccgccgttttccagacttgaacaggctggcgaaaaagtttcagcgtcagagctgt
aatttacaggactgttaccgtgtctaccaagctgttgggcaactgtccggactggtttta
gctttggagagatacagtggaaatcatcaggtcctcctgcaagcagcgttcatctctccc
ttcaatgacctcatctctgacttctgcaaatttcaagagatgattgaaactacattagat
atgaaccagattgagcatcatgagttcctggtgaaaccttcctttgatcccacgctaagt
gagctccgggagagcatggacggcttggagaaagctatgcaggccgccttaagcagcgcg
gctcgtgagcttgggctggaagcaggtaaaaccataaagctggactccaatgcccagatc
ggttacttctaccgagtcacatgcaaagaagagaaaagccttcgcaacaacaagaaattt
acaactttagatgttcagaagaatggggtgcgctttacaaacagtaagctgagctctttg
aatgacgaatacaccaaaagcagggaagagtacgaagaggctcagaatgccatcgtcaaa
gaaattataagcatcgcttctggatatgtggatccagtgcagaccctgaatgaggtgata
gctcagctggatgcagttgtgagctttgccgttgtgacccatgctgcaccggtgccttac
gtaaggcccaaaatacttgagaaaggatcaggcagactcattctgaaggcatcaagacat
ccttgtgtcgaagcccaagatgatgtggctttcattcctaatgatgtcactttctcaagg
ggtaaagagatgtttcatatcatcacagggccgaatatgggtggcaagtccacttacatc
cgtcaggtgggcgtaattgtcctgatggcacagattggctgttttgtgccatgtgatgag
gcagaactaagtgtggtggactgcgtgctcgctcgagtaggtgcaggggatagccagatc
aaaggagtgtccacctttatggctgaaatgctggagactgctgctatcctccgatcagcc
acagaggattctctcattattattgatgagttgggcagaggcacatccacatatgatggc
ttcggtctggcctgggcaatctcagagcacatagccacccgcatcaagtctttctgcctg
tttgctactcactttcacgagctgacagtgttggcacagcaggtccccactgtccgtaat
ctccatgtcactgccttgaccacagacaacactcttacaatgctctacaaggtcaaacca
ggtgtatgtgaccagagctttgggattcatgttgcagagctcgcaaacttccccaagcat
gtgattgctaaagcacgggagaaggctatggagcttgaggagttccaggatttctccaga
gttgaagaggggtcagatgctggacctgaagccaaaaaacgctgccttgagaaacaggag
ggggagaagatcattgaagcctttctggctaaaattaaagcacttcctgttgatggcatg
actgatgaagctgtcaaaaaggagctgtgcaagttgcgggcagaggttattgcccaaaac
aatagctttgtcaatgcaatattgtcacatattaacaaagtcaaatag
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