Triplophysa rosa: 130569147
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Entry
130569147 CDS
T09216
Symbol
skic3
Name
(RefSeq) SKI3 subunit of superkiller complex protein isoform X1
KO
K12600
superkiller protein 3
Organism
tros
Triplophysa rosa
Pathway
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130569147 (skic3)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130569147 (skic3)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Ski complex
130569147 (skic3)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_1
TPR_2
TPR_19
TPR_8
TPR_14
TPR_11
TPR_16
TPR_17
TPR_CcmH_CycH
TPR_12
TPR_9
ANAPC3
HAT_PRP39_N
ARM_TT21_C
TPR_COPA_B
TPR_15
CompInhib_SCIN
DUF7017
TPR_30
Motif
Other DBs
NCBI-GeneID:
130569147
NCBI-ProteinID:
XP_057214553
LinkDB
All DBs
Position
LG2:complement(10186758..10351000)
Genome browser
AA seq
1615 aa
AA seq
DB search
MRFRSQPLSRRCNATGSSLFNDVIVGPAHALFVTHRSLQKTTSGNLNNMSSKEVKAELKS
AREAIKNKDFKQALKHCKVVLKQENNNYNAWVFIGVAATELQQLDQAQAAYAKATELEPE
QLLAWQGLANLYEKSNQADFKANLPKVYQKLIMLYEPSDKAKCFEVSKKLVDIYQSENNY
LQVARVWQKLILLKEGEDGVQNLELLQLWMEMTRLLQATVEDQDNETQQHLMLAFERALE
LTVDVPSEAHRSLTENYINFLSKLPYEVIKLKEICNGTLSLYPTFSYPLEVLSEHYIKTG
DCSEEAVCYFRRLSELDPNNSVANFGLGVKALQERKYEDAIKCLKLGLQQRQCSIIGLYN
LALAQLKTHRYADCITSSSQGLELSVGNSDDWTQKLQRLRLEALVRTGRKQDADEVLQII
AQISDAKNDPVLLALKGRALLQKDQADEAFEVSLELLRLYPSSVEGLTLRGLIYVALNEH
NRAEESFLEALYRSSENGEICFLLGRLYWSIGEETRRDRRKSHAYLLKAANLDPYLGLVF
RFLGHFYRQVAQDQGRARGCYNRAFELDSSDAEAGAATVDLSMEQGDMDTALAVLQSVTE
SAAPGTAKWAWMRKGLYYLKLGQHQQAITDLQAALRADPQDWVCWECLGEAYLNRRSFTA
ALKAFAKAHVLQPTSIYSLYQTAAIKQILGQFKEASVEYKQILEQDDYVPALKGLGECLL
ALAKSALEDCLDGRAIDLIQDSIYYLFRAVQQRPDLSCLWKLLGDACTTCRTVSPNHCRV
LVPGALCAVHPPDQSYILDQQQLYNLGERCFGSALKLMPEVPSLWCDLGLNYYHQSRLFN
SLSDEDSQPLLQKALQCLKKAVMLDSADYIYWNALGVVAMAKGIDNLALAQHSFIKSVKA
ESNNVVAWTNLGALYLKKGNIELSHEAFKTAQSLEPHYVNCWIGQALIAETVGSYDTMDL
FRHATELSTHTEGVKAYAYWVCSTLLNKSNRDSELYLYNILQMNAVSAAQGALSKYTERI
RTDPDALIMLGYLNTHLHLKNQATEAFRRAVELLQVSPCTEKLSFALRGYGHALSNNREY
EESVHIYSSTPLEELHDFIGLALACFRTGHQPESIQAYEKALAVASSDKEKAYILTALAL
IQHRLGNLDHAKSLLFKCSMLKIPVPESLQCLCTLGLVHEDVTLANATLTELLKLGEPIG
GAVEEGCLLTCTLQALKSNYSGVHRVVSGAIHRYPGNRSLWALLSRLVPQYCPNNANGGA
VAGNVACHDHSTFGKSALLYSGVNQLASGHHSSKDKRWKALKTIQRAVLLCPDDPAGWAG
LMAACHTENTASLLTGSTPYRDCLERSFMTLVSEKVKDLQGGDGLLAQALEGWVLQQAVT
GLKQSGQYDQAEALCSQVLRVSPEHPVVFLMLRQVQCERLLLSVTDNYVRPAVMDQLSAA
VMTSHTSVSAWHWLAEMYCCQGLLTEASVACKQSLQLTSQFGDNSGKISSLLRLALVALR
PCMAGVCLSGWKDLVLEASTEVLKMGSSPIALLFQALLQFSVKIGGRETRRLLERIVYAS
PSGTSDTVVSVARWYLLRHLHAKDDMELIETLLVEGKEAGDSRLLEFHKRLFPSC
NT seq
4848 nt
NT seq
+upstream
nt +downstream
nt
atgcgatttcggtcacagcccctgtcgcgccgctgtaacgcaaccggttcgtccctgttt
aatgacgtcattgtgggacccgcgcatgcgctatttgtcactcacagatcgctacagaaa
acaacttcgggcaatttaaataacatgtccagcaaagaagtaaaagctgaactgaaaagt
gccagagaagctattaaaaataaagattttaaacaagctttgaaacattgtaaggttgtt
ctcaagcaagaaaataataactacaatgcttgggtattcattggcgtggcggccacagag
ctgcagcagcttgatcaggcccaggcagcctatgcgaaagcaaccgaactggagccagaa
caactactggcatggcagggtttagcaaatctgtatgaaaaaagcaaccaggcagatttc
aaggccaacctgccaaaggtttatcagaaacttataatgttatatgaaccgtcagacaaa
gcaaagtgttttgaagtaagcaagaaactggtggacatctatcagtcggagaataattat
ttacaggtggccagagtgtggcagaaattgatactgttgaaggagggggaggatggagtc
cagaatttagagctgctgcagctgtggatggagatgaccagactgctgcaggctactgtg
gaggatcaggacaatgagactcagcagcatttgatgttagcatttgaaagagcattggag
ctgactgtagatgtacccagcgaagcccacaggagcctcacagagaattacatcaatttt
ctttctaagcttccttatgaggtgatcaagctaaaagagatatgtaatggcacattgtct
ctctatccaaccttctcctaccctctagaggtcctcagtgagcactacataaaaacaggt
gactgcagtgaggaagctgtgtgctatttcagacgtctctcagaattagatccaaacaac
tcagttgctaactttggcctcggtgttaaagctctccaagagaggaaatatgaggatgcc
atcaagtgtcttaaattgggactacaacaaaggcagtgttccatcatcggtttgtataat
ctggctctggctcagctaaaaacgcatagatacgctgactgtatcacatcgtccagtcaa
gggctagaattgagtgtggggaactctgatgattggacacagaagctacaaaggttaaga
ctagaggctctggtaaggactggaagaaaacaggatgctgacgaagtactgcagattatt
gcacagatttcagatgccaaaaatgacccagtgctcttagctttaaaaggaagggctctc
ctgcaaaaagatcaagctgatgaagcttttgaggtttctttggagctgctacgcttgtac
ccgagctctgtggagggtcttactctaaggggattgatttatgttgcattaaatgaacac
aaccgggcagaggagagctttctggaggctttatacagaagctcagagaatggggagatt
tgcttcctcttagggcggttgtactggagcataggagaggagactcggagggaccgtcgc
aaatcccatgcgtatttactgaaggcagctaatctggacccctatcttgggttagtgttc
cgttttcttggccatttctacaggcaggtggcacaagatcagggcagggccagaggctgc
tataacagagcatttgagctggattcatctgatgcagaggctggagctgctactgtggac
ctgagcatggagcagggagatatggataccgctctggctgttctgcagtcagtgacagag
agtgccgctcctggcaccgctaaatgggcctggatgagaaaaggtctctactacctgaag
cttggccagcaccagcaggctattacagatttgcaggcagcattgagagctgatccacag
gactgggtgtgctgggaatgtttaggtgaagcttacttgaatcgcaggagttttacagct
gctctaaaagcctttgctaaagcacatgtcctgcagcccacatccatctacagcctctac
cagaccgctgccatcaaacagatcctgggacagtttaaggaggcttctgtggaatacaag
cagatcctagagcaagatgactatgttccagctcttaaaggtttgggtgaatgcttgtta
gccttagctaaaagtgcactggaggactgtctagatggcagagcaatagacctgatacag
gactcgatctattatctctttagggcagtccaacagaggccagacttgtcctgtctgtgg
aagttacttggtgatgcttgcaccacctgcagaactgtgtccccaaaccattgcagagtg
ttggtacctggggctctgtgtgcagtgcatccacctgatcaaagctacattctggaccag
caacagctctacaatctaggggaaaggtgttttgggagtgctttgaaactaatgccagag
gttcctagtctgtggtgtgaccttggccttaattactaccaccaatccagactattcaac
tctctttctgatgaggactcacagcccctgctgcagaaggccttgcagtgtctgaaaaag
gcggtcatgttggatagtgctgattacatatactggaatgctcttggagtggttgccatg
gcaaaaggaatagacaacttggctcttgcacagcacagctttatcaagtctgtgaaagct
gaatcaaataatgtggttgcttggaccaaccttggagcattatatctaaaaaagggaaat
attgagctctctcatgaagctttcaagactgcacagtcacttgagccccattatgtcaat
tgctggattggccaggctttaattgccgaaacagtgggaagttacgacactatggacctc
ttcagacatgcaacagaactgagtactcatactgagggtgtgaaggcttatgcatactgg
gtttgttccacactgctgaacaaaagcaacagagactcagaactgtacctctacaacata
ctccagatgaacgctgtctcagctgctcagggggcgctgagcaagtacaccgagaggatt
cggacagaccctgatgctttgatcatgcttggatacctgaacacacacctgcacctgaaa
aatcaggccactgaggcatttcgcagagctgtagagctgcttcaggtgtccccttgcact
gaaaagctcagctttgcactgaggggttatggacatgccctcagtaataacagggagtat
gaagaatctgtacatatttattcttccacaccgttggaggagttacatgatttcattgga
cttgcacttgcctgcttcagaactggtcaccagccagagagcattcaggcttatgaaaaa
gcccttgctgttgcctctagtgataaggaaaaggcatatatactcaccgcacttgctttg
atacagcacaggctgggcaacttggatcatgccaaatccctgctctttaagtgctcaatg
ctgaaaattccagtgccagagagtctgcagtgtttatgtactcttggtttagttcatgag
gatgtgaccctggcaaatgctacgcttacggagttgttaaagctgggagaaccaataggt
ggtgctgtggaagaaggctgtctgctcacctgcaccctgcaagccttaaagagcaactat
agtggagttcacagagtggtttctggtgctatacacaggtacccaggaaatcgatctctc
tgggctctcctctccagactggttccacagtactgtcctaacaatgccaatggaggtgct
gtggctggtaatgtggcatgtcatgaccactcaacatttggaaagagtgcattgctgtac
agtggagtgaatcagctggcatctggtcaccactccagcaaggacaaaagatggaaggct
ctaaaaacaattcagagagccgtgctgctgtgtccagatgatcctgctgggtgggcagga
cttatggctgcctgtcacacagagaatactgcatcattactcacaggctccaccccttac
agagattgccttgaaaggtcttttatgactttggtttctgaaaaagtgaaggaccttcag
ggaggggacggattgcttgctcaggctctggagggctgggtgctacagcaagctgtgaca
ggactcaaacagagtggccaatatgaccaggctgaggcgctctgctctcaggttctgaga
gtatctccagagcatcctgtggtgtttctaatgttaaggcaggttcagtgtgaacgtttg
cttctgtctgtgactgataactatgttcgtccagctgtgatggatcagctcagtgcagct
gtcatgaccagccatacctctgtgtctgcttggcattggctagcagaaatgtactgttgc
cagggtctgctgactgaggcctctgtggcttgcaagcagagtcttcaactgacctctcag
ttcggtgacaacagcgggaagatcagcagtctgctaagactggccctggttgctcttagg
ccatgtatggctggtgtatgtttgtctgggtggaaggatctggtgttggaagctagcact
gaagttttgaagatgggaagctctccaatagctctgcttttccaagccttactccagttc
tctgtcaagataggtggcagggaaacccggcgtctgctggagaggattgtgtatgcttca
ccctcagggacttctgatactgtggtatcggtggcacgctggtacctcctgcgccacctt
cacgccaaagatgacatggagctgatagaaaccctgttggtggagggaaaagaagcagga
gacagcagactcctggaattccacaaacgccttttcccatcttgctga
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integrated database retrieval system
