Triplophysa rosa: 130569939
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Entry
130569939 CDS
T09216
Symbol
nxf1b
Name
(RefSeq) nuclear RNA export factor 1
KO
K14284
nuclear RNA export factor
Organism
tros
Triplophysa rosa
Pathway
tros03008
Ribosome biogenesis in eukaryotes
tros03013
Nucleocytoplasmic transport
tros03015
mRNA surveillance pathway
tros05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130569939 (nxf1b)
03015 mRNA surveillance pathway
130569939 (nxf1b)
03008 Ribosome biogenesis in eukaryotes
130569939 (nxf1b)
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
130569939 (nxf1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130569939 (nxf1b)
03009 Ribosome biogenesis [BR:
tros03009
]
130569939 (nxf1b)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
130569939 (nxf1b)
mRNA cycle factors
Stress granule specific factors
130569939 (nxf1b)
Ribosome biogenesis [BR:
tros03009
]
Eukaryotic type
Pre-60S particles
Export and cytoplasmic maturation factors
130569939 (nxf1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_NXF1-5
NXF_NTF2
Tap-RNA_bind
TAP_C
NTF2
LRR_8
UBA_8
LRR_4
LRR_9
Motif
Other DBs
NCBI-GeneID:
130569939
NCBI-ProteinID:
XP_057215905
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Position
LG19:10995870..11006141
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AA seq
635 aa
AA seq
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MATADDSRYYSEHDDRVGVPKHRNRKGRGPFRAPMYSDQMSRPKHRGGHGGGGGLGPRSR
LPDDDGDVTMSDTPQDNSSQRNRFNPYGRPSNRRDERNRKGGRGGGNGGDYGGHRSHGSR
GGGGSGCDGNRKNWFKMTIPFGKKYDKDWLLSALQNLCSIPFHAVHYHTEGNKAQFYIED
STTANALVKVSRKITDKDGYKVTVIMNSCPPPTLIHTDLKPEDLEHLKQCMSKRFDGSQQ
SLDLNNIRVDPDLNALNVEVTLNRKNSMQAVIKIIEENIPELVSLNLSNNRLYRLDDLAD
IVSKIPNLKMLNLSHNELKTERELDKLKGLKMVEILLVGNPMCNHFKDHADYVSAVRERF
PKLLKLDGLDLPPPIGFDLEVPPATLPPCKPSFFGSEDMKSIILSFLQQYFSVYDSGNRQ
PLLEAYHDGATFSLGIPFSLQNPAKSSLGEYQKDSRNIKRLKDPSTRFRLLKHTRLNVVA
FLNELPRTQHDVASFNVDVNTYTNTLLAFTVTGVFKEVDGKSRDSFRAFSRVFIAVPAGN
AGLCIVNDELFVRNATTEEIRCAFVAPAPTPSSSPVPTLSAVQQEMLAAFSLKSGMNLEW
SQKCLQDNDWDFERAAQIFSGLKAHGKIPDVAFVK
NT seq
1908 nt
NT seq
+upstream
nt +downstream
nt
atggcgacagccgacgactctcgctattatagtgaacatgatgaccgtgttggagtacca
aagcatcgcaatcgtaaaggccgaggtcctttcagagcacccatgtacagtgatcagatg
tccaggccaaagcatcgcggtggtcatggtgggggtggagggcttggtcccaggtcaaga
ttgccagacgatgatggagatgtaaccatgtcagacactccgcaagacaacagctcacag
cgcaacagatttaatccatacggccggccatcaaatcggcgtgatgagcgtaatcgcaaa
ggaggcagaggaggaggaaatgggggagattatgggggtcacagaagtcatggatccaga
ggtggtggaggaagtggttgtgatggaaaccgcaagaactggtttaaaatgactattcct
ttcggcaaaaaatatgacaaagattggcttctgtctgcacttcagaacctctgttccatt
ccattccatgccgttcattatcacactgaaggcaacaaggcccagttttacattgaagat
tccacaactgctaacgctttggtgaaagtgtcaagaaaaataaccgataaagatggctat
aaggttactgttattatgaatagctgtccaccccccactttgatccacactgatctgaag
cctgaggatctggaacatttgaagcaatgcatgtccaagcgttttgatggatcccagcag
tccctcgatctgaacaacatcagagttgatccagatctaaatgctctaaatgttgaggtc
actttgaatcggaagaactccatgcaggcggtcattaaaatcattgaagagaacattcca
gagctggtttctctgaacctgagcaacaacaggttatacaggctggatgacttggctgat
attgtcagcaaaatacccaacctgaaaatgctcaatctctcacacaatgagctgaagaca
gagagagaactcgataaactcaaaggtctgaagatggtggaaatcttattggtagggaat
cctatgtgcaaccacttcaaggaccatgcggactatgtcagtgccgttcgggaacgattc
cccaagctgctcaaactggatggacttgatcttccaccccccattggctttgacttggag
gttcctcctgcaactctaccgccctgcaagcccagtttcttcggctcagaggacatgaag
agcatcattcttagcttcctgcaacagtatttcagcgtatatgactctggaaacagacaa
cccctgctggaggcctaccatgatggggcaactttctcgctcggcattcccttctcattg
cagaaccctgcaaaaagcagtttaggggagtatcagaaagacagccgcaacatcaagcga
ttgaaagacccctctacaaggtttcgtttgctgaagcacacgcgattgaacgtggtggcc
ttccttaacgaactccccaggactcagcatgacgtcgcctcctttaacgtggatgtcaac
acttacacaaatacactattggcttttacagttactggagttttcaaagaggtggatggc
aaatctcgagactcctttagagcattctctcgagtgtttattgctgtgcctgctggaaac
gcaggtttgtgcattgtaaatgatgagctgtttgttcggaacgccactacagaagaaata
cgttgtgcatttgttgcaccagctcccacgccatccagcagtcctgtgcccactttgtct
gccgttcaacaggaaatgctcgctgccttctcactaaagtctggcatgaatctggaatgg
tctcaaaaatgcttacaagacaatgattgggattttgagagagctgctcagattttctct
ggccttaaggcccatgggaaaatcccagatgttgcgtttgtaaaatga
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