KEGG   Triplophysa rosa: 130570200
Entry
130570200         CDS       T09216                                 
Symbol
prpf4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4 isoform X1
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
tros  Triplophysa rosa
Pathway
tros03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tros00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130570200 (prpf4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tros03041]
    130570200 (prpf4)
Spliceosome [BR:tros03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    130570200 (prpf4)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_WDR75_1st Beta-prop_TEP1_2nd PRP4 WD40_MABP1-WDR62_1st ANAPC4_WD40 Beta-prop_EML WDR90_beta-prop_4th NBCH_WD40 Beta-prop_DCAF4 Beta-prop_TEP1_C Beta-prop_EIPR1 Beta-prop_SCAP Beta-prop_IFT122_1st Beta-prop_RIG_2nd Beta-prop_Vps41 Beta-prop_IFT140_1st WD_LRWD1 WD40_like Beta-prop_Nup120_160 Beta-prop_WDR11_1st Beta-prop_WDR35_TULP_N DUF6597
Other DBs
NCBI-GeneID: 130570200
NCBI-ProteinID: XP_057216364
LinkDB
Position
LG2:6008513..6012878
AA seq 507 aa
MSDEDEAPVVKKTRIFYGSLEEKEKERLSREGTTSAKDAVKAGIKAGHINISSGESMEME
DRVSERQAEVLAEFERRKRARQITVSTDDVEVKACLRALGEPITLFGEGPADRRERLRNV
LSVIGPDALKKSKKEDERIKRTQDEQYQQTWYHEGPSSLKEARLWLVKYSLPRAVERLDA
ARAQKEIPESTRTVRQQELHKNLRNVNNFCSQIGDDRPISYCQFSPNSKMLVTASWSGLC
KLWNVPDCSLVRTLRGHNTNVGAISFHPQATLTLDESDVNMASCAADGSVKLWSLDSDEP
VADIEGHSMRVARVAWHPSGRFLGTTCYDCSWRLWDLEVQEEILHQEGHSKGVHDLDFHP
DGSLAGTGGLDSFARVWDLRTGRCVMFLEGHLKEVYGINFSPNGFHVATGSGDHTCKVWD
LRKRRCIYTIPAHQNLLSSVKFQPTDGHFLLTGAYDNTAKVWTHPGWSPLKTLAGHEGKV
MGLDLSPDGQLIATCSYDRTFKLWMSE
NT seq 1524 nt   +upstreamnt  +downstreamnt
atgtcggacgaagacgaagccccagttgtgaaaaagaccaggatcttctatggaagtctt
gaagaaaaggagaaggaacgcctcagccgagaaggaacaacttctgctaaagatgcggtt
aaagcaggcatcaaggctggacatattaatatctccagcggtgagtccatggaaatggag
gaccgcgtgagcgagcgacaggctgaagtattggcagagtttgagcgcagaaagcgagcc
agacaaatcaccgtctccaccgatgatgttgaggtcaaggcttgtctccgagctcttgga
gagccgatcacgctgtttggcgaaggacctgcggatagacgagagagattgcggaacgtt
ctttcagtgatcggtcctgacgctttgaagaaatccaagaaagaagatgaaagaataaag
cgcacgcaagatgaacagtatcagcagacgtggtaccatgaaggtccttcctctctgaag
gaggcgcgtctgtggttggtgaagtattcattgcccagagcagtggagaggttagacgcc
gcaagagcccaaaaggaaattccagaatctacaagaacagtacgacaacaagagcttcac
aagaacctccggaatgtgaataacttctgcagtcagattggcgatgaccgtccaatatcc
tactgccagtttagtcccaactctaagatgctggtgactgcatcttggagtggtttgtgt
aaattgtggaacgtcccagactgttcactcgtgcgcacattaaggggtcacaataccaac
gtaggagcgattagctttcaccctcaagccacgctgacattggacgagtcagatgtcaat
atggcctcctgtgcggcggacggctcggttaagctgtggagtttagacagtgatgagcct
gtagcagatattgaagggcattccatgagggtggcacgggtagcctggcacccatctggg
cggtttttgggcacaacttgctatgattgctcatggcggctgtgggatcttgaagttcaa
gaagaaattttgcatcaggaaggtcacagtaaaggagtccatgaccttgactttcacccg
gatggctcgctcgcaggaactgggggtctggactcgtttgctcgtgtctgggacctgcgt
accggtcgttgtgtgatgttcctagagggtcatctaaaagaggtttacggcatcaacttc
tcaccaaatggcttccatgtggcaacaggaagtggagatcacacctgtaaagtgtgggac
ctccggaagagacgttgtatatacacgattcccgcccatcagaacctcctgtcatctgtc
aagtttcagcctacggatgggcatttcttgctgactggtgcgtatgacaacacagccaag
gtgtggactcatccaggctggtctcctctgaagactctggcgggacatgagggaaaggtt
atggggcttgacctttcacctgacggacaacttattgcaacctgctcttatgaccgaacc
ttcaaactctggatgtcagaataa

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