Triplophysa rosa: 130570265
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Entry
130570265 CDS
T09216
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tros
Triplophysa rosa
Pathway
tros03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130570265 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tros03021
]
130570265 (pcf11)
03019 Messenger RNA biogenesis [BR:
tros03019
]
130570265 (pcf11)
Transcription machinery [BR:
tros03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130570265 (pcf11)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
130570265 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
SHOCT
Ribosomal_60s
DUF6980
Motif
Other DBs
NCBI-GeneID:
130570265
NCBI-ProteinID:
XP_057216472
LinkDB
All DBs
Position
LG19:complement(12797645..12806001)
Genome browser
AA seq
1432 aa
AA seq
DB search
MSDENAREDACREYQSSLEDLTFNSKPHINMLTILAEENIQFTKDIVAIIEAQIAKAPPV
EKLPVLYLVDSIVKNVGGAYLEVFAKNLVNSFICVFEKVDEGTRKSLFKLRSTWEEIFPL
KKLFALDVRVNSVDPAWPIKPLPPNVNASIHVNPKFLKPTEKVSPKPSIPQLPVQNLTQE
QLIRQQLLAKQKQLLELQQKKIELELEQTKAQLAASPAVAASHHAVAPVPMVTQTVPTPQ
TKSWLPAPSEKLATRDPRLNRTGGGTKEQVTQKKESLVTPSFLNTSEKRGQVVTERQNRL
DRMRIPKKDNSANEDKAKSKSASPIGKGNLAKHREIESQHAKAAEMHKKDPRLHKQINDK
TDSKEEDVREKKRSSEKKDRDEALKSMDHQKSRGKLPNGSLNKHERLETFIKQEIKAKAN
FRKRSRSRSRSPPTHSPKRKERRSSPKRKTRSISPPSKSVKPRQLSKHAHDESFPQTSVR
DERSTAKKSVSETRRSKRPLEERAADHKDGSQQRISDHKDPKDGKRWRSGWEENKHPKQS
EQDHGRLGAQRHKTWITNQRPTTPRIPKQHRLSVDSNLLIPEALNSASKRDLLRKASKRH
AEGEISNEEFLDVAHQINKLFQYQEERQRSDSWDDSCDEGAYPSNKKPQSITEAALSYLE
HKSKLRKTQLYRPVQKEDHLYENIQYHLPHEPDEKYSEGSDMHKKPHNATKPVSDQDDPR
RTDRELSSTLSTFRNSQSPVTERASSPAEMDMEGDISPRFESPNSVHSGTGPDDGPINLE
ALPRHDLFVEQERSVLNLGDSPGHTPTHSSEGPAAKANMPRHEGPNMPQRFDRYKSSQAP
YDGAPSHIREPRLDGPPRPYTPARYEGNTGGFDGSGGHGPVRFPGPRFDAPRLRFERPPF
PKTHERPVRYNNPPHRPMRYAEPHNMVRYGEPQGPVHFDHPMHQNRYAAPPRFDNPPMPA
GTPGYDESRFQVRPMNYDDQQGAVRFDNPTGGMPFENPLQSESVRFDVPPAMPRYDQQGP
PRFCGPNIQNQLRPQEPTMYDQSQGQGLMMNPAIPPPNFNVPPMNSFGGPPQQFPMQQSI
SQASTFSVPGATSYRPPLSGPGVANVPQPIMGAPNQPFIPQNQLPFPPAPQFTQPEPFRQ
IDVNDLFSKLLLKGIIKAPQTDTTAADSPSASQTMAVPEEEEEEEQEEEDNVPDMTSFVL
DDMKQRHDSVVTKLYTGIQCYSCGMRFTASQTDIYADHLDWHYRQNRSEKDISRKVTHRR
WYYSLTDWIEFEEIADLEERAKSQFFEKVHEEVVQKTQEAAKEREFQSVKAAADVVHELC
EICQEQFEMYWEEEEEEWHLRNAIRVDEKTYHPSCYEDYKNTSSFVDCTPSPNKMLTENP
LTAFLKQEQGDEETSCSSIKEEPTEDGTDAPTVKEEVQVKLEGESETSAIIF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgaaaacgcgagggaggatgcctgtcgcgagtatcagtcctcgctcgaagat
ctgactttcaacagcaaaccgcacatcaacatgctcaccattctagcagaagagaacatc
cagttcaccaaggatatcgtcgcaataattgaagcacaaattgccaaggcacctcctgtt
gagaagctcccagttttgtacttagtggattccatagtgaagaatgttggaggcgcgtac
cttgaagtgtttgctaagaacctagtcaattcctttatttgtgtatttgagaaggtggat
gagggcactagaaaaagtctcttcaaattgcgttccacatgggaagagattttccctttg
aagaagttgtttgcactagatgtgcgtgtgaactctgtagatcctgcctggcctattaaa
ccgttacccccaaatgtgaatgccagcattcatgtcaacccaaaattcttaaagccgact
gaaaaagtttctccaaaaccctcaataccacaacttccggttcagaatttgacacaagag
cagctgataaggcaacagttacttgccaagcaaaagcagttgttagaacttcagcaaaag
aagatagagcttgaacttgagcaaacaaaagcccagttggctgcaagtcctgctgttgca
gcaagccaccatgctgttgccccagtaccgatggtcactcaaacagttcctacaccccag
accaaatcttggcttccagcaccatcagagaagttggccaccagagatcctagattaaac
agaactggtggaggtacaaaggaacaagtgacacaaaagaaggaaagtctggttacacca
agttttctgaatacatctgaaaaaagaggacaagtggtaactgaaagacagaacaggttg
gacaggatgaggataccgaaaaaggataactctgccaatgaggacaaggctaaatcaaag
tctgcgtcaccaattgggaaaggtaaccttgccaaacacagggaaattgagtctcaacat
gcaaaggctgctgaaatgcataaaaaggacccaaggctacataagcagataaacgacaag
accgactcaaaagaggaggatgtcagagagaagaaaagaagttcggaaaagaaagacagg
gatgaagccctcaaaagcatggatcatcagaaatccagaggcaagcttcccaacggctct
ttaaataagcacgaaagactcgagacttttataaaacaagaaattaaagctaaagcgaat
tttagaaaaaggtcccggtcaaggtcgcgttcaccaccgacacattctcccaaaagaaaa
gagagacgatcatctccaaagagaaaaacgaggagcatttctccaccctccaagtctgta
aagccgaggcagttaagcaagcatgcacacgatgagtcttttccacaaacaagtgtaaga
gatgaacgaagtactgctaagaaaagtgtctcagaaacaagacgatccaaacggcctctt
gaggaaagagctgctgatcataaggatggctcgcagcagagaatttctgatcacaaagat
ccaaaagacggcaagcggtggaggagcggatgggaggaaaataaacatcctaagcagtca
gagcaagatcatggaagactgggcgcacaaagacacaagacgtggatcactaatcaaaga
cccaccacacctcgtatacctaaacaacatcgcttgagtgttgacagcaacctgttaata
ccagaagcactcaattctgcaagcaagcgagatcttttgagaaaggcaagcaaaaggcat
gctgaaggtgaaatatccaatgaggaattccttgatgtagcccatcaaataaataaactt
tttcagtatcaagaggaaaggcagcgctctgactcttgggatgactcatgtgacgaaggc
gcgtacccatcgaacaagaaaccgcaatccattactgaggccgcgctttcatatctagaa
cataaatcaaagttgaggaaaacacagctctatcgtccagtgcaaaaagaagaccatttg
tatgaaaacatccaatatcaccttcctcatgaaccagatgaaaaatacagtgagggctca
gacatgcataagaaacctcacaatgccacaaagccagtctcagaccaagatgatcctaga
agaaccgacagggagctgtcaagtacgctttccactttcagaaattcccaaagcccggtc
acagagcgggcatcatcgcctgctgaaatggacatggaaggagacatcagcccacgtttt
gaaagtcccaacagtgtgcactccggcacaggcccagatgatggtccaataaatttggaa
gctcttccgagacacgacctctttgtggaacaggaaaggagcgtattaaaccttggtgac
tctccaggacatacaccgacgcattcttctgaaggtcctgctgcaaaggcgaatatgcca
cggcatgagggaccgaatatgcctcaacgatttgatagatataagagttctcaagctccc
tatgatggggcacctagccacatcagggagccgcggttagatggtccgccaagaccttat
actcctgctcgatatgaaggtaatacgggtggatttgatggctcgggcggtcatggacca
gttaggtttcctggacctcgatttgatgctcctcgcttaaggttcgaaagaccaccattt
cccaaaacccacgaaagacctgtgagatataacaacccaccacatagaccaatgaggtat
gcagagcctcataatatggtgagatatggtgaacctcaaggccctgttcatttcgatcat
ccaatgcatcaaaacagatacgcggctcctccaaggtttgataatccccccatgcctgcg
ggtacaccaggatatgatgaatcaaggtttcaagttagaccaatgaattatgatgaccag
caaggtgctgttagattcgataatccgacaggtggaatgccgtttgaaaacccactgcag
tcggaatcagtaagatttgatgtacctccagccatgcctagatatgaccaacaaggcccc
ccaagattctgtggtccaaacatccaaaatcagctgagaccacaggagccgacgatgtac
gatcagtcacaagggcaaggtcttatgatgaaccctgccataccaccacctaatttcaat
gtgccgcccatgaactcattcggaggcccaccccagcagttccccatgcagcagagtatt
tcgcaagcatcaaccttcagtgtgccaggtgcaacgtcatatagacctccgttatctggt
ccaggtgttgcaaatgttcctcagcctattatgggagctccaaatcagccctttatacca
caaaaccagctaccattcccacctgctccccaatttacacagcctgagccatttaggcaa
atagatgtaaatgacctgttctcaaaacttctgctcaaaggaattataaaagctccacag
acagacacaacagctgctgactccccctcagcaagtcagactatggctgtgcctgaagaa
gaggaagaggaagaacaggaggaggaagacaatgtcccggacatgaccagctttgttttg
gatgacatgaaacagagacacgacagtgtggtcactaaactgtatactggaatccagtgc
tattcatgtggcatgcggtttacagcgtctcagacggacatctatgctgatcatttagac
tggcattacagacagaaccgttctgagaaggacatcagtaggaaagttacacatcggagg
tggtactacagcctgacggattggattgaatttgaggaaattgcagatctcgaggagagg
gcaaaaagtcagttctttgaaaaggttcatgaggaggttgtacagaaaactcaggaagct
gcaaaagagagagagttccaaagcgtgaaggctgctgcagatgttgtccatgagttatgt
gagatttgccaggaacagtttgagatgtactgggaggaggaagaggaggagtggcatctg
aggaatgccatcagagttgatgaaaagacatatcatccatcatgttacgaagactacaaa
aatacatcctcctttgtggattgcacaccctcgcccaataaaatgcttacagaaaaccct
ttaacagctttcctgaagcaggagcagggcgatgaggagacctcatgctccagcattaaa
gaagaacccactgaggacggtacggatgcacccacggtaaaggaggaagttcaggttaag
ttagaaggagaatcagaaaccagtgcaattattttctaa
DBGET
integrated database retrieval system
