Triplophysa rosa: 130570293
Help
Entry
130570293 CDS
T09216
Symbol
cnot6a
Name
(RefSeq) CCR4-NOT transcription complex subunit 6a
KO
K12603
CCR4-NOT transcription complex subunit 6 [EC:
3.1.13.4
]
Organism
tros
Triplophysa rosa
Pathway
tros03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130570293 (cnot6a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130570293 (cnot6a)
Enzymes [BR:
tros01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
130570293 (cnot6a)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130570293 (cnot6a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
130570293 (cnot6a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Exo_endo_phos
LRR_8
LRR_4
LRR_14
LRR_1
LRR_LRWD1
LRR_R13L1-DRL21
Motif
Other DBs
NCBI-GeneID:
130570293
NCBI-ProteinID:
XP_057216521
LinkDB
All DBs
Position
LG19:8826130..8839958
Genome browser
AA seq
557 aa
AA seq
DB search
MPKEKYDPPDPRRMYTIMSSEEVANGKKSYWAELEIVGRVRSLSSALWSLTHLTALHISD
NSLSRIPPDIAKLHNLVYLDLSSNKIRSLPAELGNMVSLRELLLNNNQLRVLPFELGKLF
QLQTLGLKGNPLAQEIMILYQEPDGTRRLLNYLLDNLAGTKRVSIEPPPPRSWIALQEPD
RTRPAALFSVMCYNVLCDKYATRQLYGYCPSWALNWDYRKKSIMQEILNCSADIISLQEV
ETEQYYNYFLVELKEQGYEGFFSPKSRARTMSECDRKHVDGCAIFYKTEKFSLVQKHTVE
FNQLAMANSEGSEAMLNRVMTKDNIGVAALLELRKEMMEQSAGKPMHGMEKQLLLVANAH
MHWDPEYSDVKLVQTMMFLSEVKNIVDKATRSLKLSSVSGEPNAIPLVLCADLNSLPDSG
VVEYLSTGGVDSTHKDFRELRYIDSLTNFNCNGKNGTSSTRITHGFKLKSAYEDDLMSYT
NYTFDFKGIIDYIFYSQPLLNVLGVLGPLDPLWLHENNVSGCPHPHIPSDHFSLFAQMEL
LLPFLPAVNGIHLPGRR
NT seq
1674 nt
NT seq
+upstream
nt +downstream
nt
atgcccaaggaaaaatatgatccgccagacccaaggcggatgtacacgataatgtctagt
gaggaggtggccaatggaaagaaatcatattgggcagagttggagattgttggtagggtg
agaagtttaagttcagcattatggtccctcacccacctcactgctcttcatatcagtgat
aattcgctctcacgtatcccgcccgacattgccaaactacacaacttggtgtacctggac
ctctcgtccaataagatcaggagtctgcctgccgaactaggcaacatggtatctctcagg
gaactgcttttaaataacaaccagttacgagttctgccttttgagcttggaaaactcttt
cagttacaaacgttgggtttgaaaggaaatcctcttgcacaagaaatcatgatcctctac
caagagcccgatgggacgcgccggcttctcaactacctgctggacaatctcgcaggtacc
aaacgcgtatctatagaaccgccaccacctcgctcgtggatagcactgcaggagccggat
aggacacgcccagcggctctgttctctgtaatgtgttacaacgtgctgtgtgataagtac
gccacgcgtcagctctacggctattgtccttcctgggccctcaactgggactacaggaag
aagtccatcatgcaggagatccttaactgcagcgctgacatcatcagcttacaggaagtg
gaaacggagcagtactacaactacttcctagtagagctgaaagaacaaggttacgaagga
ttcttcagccccaagtctcgagccagaacgatgtcggagtgtgaccgcaagcatgttgat
ggctgtgccatcttctacaaaacagagaagttcagtctggtacagaagcacacagtggag
ttcaatcagctggccatggcaaattcagagggctcagaggccatgttaaacagggtgatg
accaaggacaacatcggtgtagccgcactactagagctacggaaagagatgatggagcag
tctgctgggaagcccatgcatggaatggagaaacagctcctcctggtggccaatgcccat
atgcactgggacccggagtactctgacgtgaagctagtgcagaccatgatgttcctgtct
gaggtgaagaacattgtggacaaggccacccgcagtctaaagctctcttctgtttccgga
gaacccaacgccatccctcttgtcctctgtgctgatcttaactctctacctgactcgggt
gtggtggagtacctgagcacgggtggcgtggacagcacacacaaggacttcagagagctg
cgatatatcgacagtttgaccaacttcaactgtaacggcaagaacggcacctccagcacc
aggatcacgcacggcttcaagttgaagagtgcctatgaggacgacctgatgtcttacacc
aactacacctttgactttaagggcatcatcgattacatcttctactctcaacctttgctt
aacgtgttgggcgtgctgggtccccttgaccctctctggctccatgagaacaatgtcagt
ggctgcccccatccccacattccttccgatcacttctccctgtttgcacaaatggagcta
ctcctgcccttcctgcctgctgtcaacggcattcatctgcctggccgcaggtag
DBGET
integrated database retrieval system
