Triplophysa rosa: 130570330
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Entry
130570330 CDS
T09216
Symbol
setx
Name
(RefSeq) LOW QUALITY PROTEIN: probable helicase senataxin
KO
K10706
ATP-dependent RNA/DNA helicase, senataxin [EC:
5.6.2.5
5.6.2.3
]
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tros03021
]
130570330 (setx)
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130570330 (setx)
5.6.2.5 RNA 5'-3' helicase
130570330 (setx)
Transcription machinery [BR:
tros03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
130570330 (setx)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_11
AAA_12
SEN1_N
AAA_19
Viral_helicase1
AAA_30
AAA_22
AAA_16
nSTAND3
Motif
Other DBs
NCBI-GeneID:
130570330
NCBI-ProteinID:
XP_057216574
LinkDB
All DBs
Position
LG19:complement(20432764..20459401)
Genome browser
AA seq
2411 aa
AA seq
DB search
MMMMIENCMWCTTSLDVEGGEAIRTLLRRYGSEKLSKHEMDSLNEDLSCCMDCVVEYHRA
RDGVTELHKVLWELEKARLLHVLGSMLDQELGEDDDILIIEDDHEEPVSKISPTEFLNSL
RFPLFEVLKYPYLLCHPELCAMAVKALCVLQDMKQSLNVFEKYQGTYLLLVHPDEKVRRW
AIDAAKTMKSVDRDAYYDLQEIFSCMLYVIELGFYQDVPDLDPDSYARGTIERLPSHLYD
AHNKKNYWLGICMLLTQLSAETMDSLFMGQFNIPLCILNTMDGLKNEDDFASDPFWPALQ
CFMVILDRLGSKIWCQVDPIVAFQTITGAASYTAEIRNIQQKTMGGKVKVEPEFDDNMVT
CSQMVYDCYASEKTSKTTSTSSSGGICNNMIYEDMQSLVNVLDSEMGQSMRVYGSTFLWF
IPFVRSIMDLPEFNASYIRQVIHYLCDKINVSRHMLNGQTNMCDKVTEFFTRILIQIVEL
HLNEGRMGKLSRCAHIWVEVIVMCTVLSDELFNSRPPDWMGGIHRVSSTSNTLGYRLPAP
DSGVCPIIQGCNTLIRSLLKEGKRTGSDQRSTRYLNXLNKQLRGDLNKRWKLTSSESAEL
QRCLESIVKSMPERPASPPSALSTPSIEAAPNGNLFKTTTLHALQHEDQEAGPSRAGEAP
TFIKEEPLWDCISDDDFFSSLEDIMEAKKEPSEPVMISERQRPPVGLAHIKPDLEKLQEL
RSRLIDNQNLTKIEAIAQRMPCKPEVGGDSLGHEELPVTSKQVQMAAAKEECGFGDEIEE
DDDEPLDIRLVRLMKSQRNVGKKHAIGTSKENFGTIIISDDEISESGERPTNEIVMSCDE
NKFPVSPESPGRDYDDLSESQVFEFETQQYVTSAWEDSDFDTSVVTRKFKFDSALKPQVT
PVPDEGSPSWCSETEAVPDEHIERACQQAEEKIGQQKQNEEKIRQQQQTEEKIRQQMQKE
EKIRQQMQRAEKKRQQQEAEEKIRQQQQPQEPTVSCASSSSKLNSPVEFNDKFIKQTTLP
VKNQKTLPSEKRDTVQSKKPLIIEALAQKIRRHHWKRTLSSQDDEEPPLTSASSXELPAP
STSSSSISSACFLSSTSRGIPAVVPPKKVRKAVEPESTVERLGLKKRERKAFELSQRSLD
SVAKLRGHGQKVQVEQQQIRRRVSATKTSPQKRMGKGNKKLLASQDMQFFRQSRDKRQRP
AVVSPTTPAPKPTTSTQPGGMHPLKPMIGEKDFAFHYSADGQDLAEGREVSTATEIKTNH
TKENCDATSAVAEHNRTESEYLRSGEFADAAVNKKVKKDAEDAKEEADDEWMFLTQMEPT
DMELCSQMEQYEENDERFFLKRRDPVDMDLDMDDEVNESDTTGQPVSAHKPSHPMQTPAH
KPSHPMQNPNTSKRIDSSDDNLFLKPGMSPMSQKKAKPSTTKIYTPSSRSASLVQEMEKG
DKPPPVCNTSKAKVARPPPAMPPPKTTPPPVPSTQFAHPMPFRPIARPQSHAPKSITSTK
ISSTSEPPSYKTYPRPEAPVHRPAHTMDHSPNFDISFLTQAILKWEYRMLENYKIFGSPD
DLCQHPLKEVPVKFTSYLEYFNTMYPLLLVNAFEEMAKEWQKKGRITLFAKVQGMEYSNH
IASTNFIAGLNLNEEMKQLYPKEDDLVLLWLPENTGAYTHDDHDILGHAHFGYVSRSNVS
NRGPGTISTLNMTVQTRGNVSSVNAQPVRCEVIGSLVSAFREFRALCLLRNGTMLRPLLT
SHVSYFTHSRDIQQKMDTPEYNVDQSRVIACGLAMIKRTQKTPKFLLIHGPPGTGKSKTI
GGLLYKLLSSVGNGAAPVGSLSSKARRTRILLCAPSNAAIDSLMKKVIVVFKEKCRNINI
PQGNCGDINLVRLGSERTISKSLKPFSLDHQTRARAQRAQQTVEADIQTQKEQLDHRIDI
LSRRCAKVQKDSTEFNILTKEKLQLLTEREGLSRKIKECRSKRQESQALVLQNAHVICCT
LSTSGSIILENAFRRLGHEPFSCVIIDEASQAKETETLIPMLYRCPAVILVGDPNQLPPT
VVSLKAKELGYDQSLMARLYKSLHQSNPQPSPVFLLSMQYRMHPDICEFPSKYIYNNTLK
NDCETAQKRCSFSWPFKPYRVFDVTDGRENKERDSFFNLKEVKLVVMLLKLLGEKQSVRV
GVITHYNAQKQKILEALREPGSENKHLQVEVDTVDGFQGREMDCIIVSCVRASSEMGSIG
FVGNRQRMNVTITRAKFSLFVLGHLRTLREQSDWGALIEDAGRRGTVIKTRERDFRNDAK
KILKRETPSRSLSHPPVNRPSTVTTPAYRTLMETGSTSTSRPHLSSVASRQQPVPKPIPL
DCPRDPGITERPTDPRFAEWRPEQRQDTERRSSSVSRQSAQRDRSNDADYRNTGHSNTYP
SQHHRSSSQRR
NT seq
7236 nt
NT seq
+upstream
nt +downstream
nt
atgatgatgatgatcgagaactgtatgtggtgtaccacgtcactggatgtggagggaggg
gaagccatcagaaccttgttgaggcgctacggttcagagaagctgtcgaagcatgagatg
gattctctaaatgaagatctcagctgctgtatggattgtgtggtggagtatcaccgagcg
agagacggtgtcactgaactgcacaaggttttgtgggaactggagaaagctcgactcctg
catgtgttgggatccatgttggaccaggagctgggggaggatgatgacatcttaatcatc
gaggacgatcacgaagaacccgtgtcaaagatctcgcctacagaattcctcaacagtctt
cgcttcccattgttcgaagttctgaaatatccgtacctgctctgccaccctgagctgtgt
gctatggcggtaaaggccttgtgtgtgctgcaggacatgaaacagtctttgaatgtgttt
gagaagtatcaaggaacatacctgcttcttgttcatcctgatgaaaaggtgcgacgctgg
gcgatcgacgcagcgaagactatgaagagtgtggaccgggacgcctactatgacctacaa
gaaatcttctcttgcatgctttatgtcattgagcttggattttatcaggatgttcccgat
ttggatccggattcctatgccaggggcaccatcgagagactgccctctcacctctatgat
gcacacaataagaagaactactggctaggcatctgtatgttactaacacagctcagcgct
gaaacaatggactctctgttcatggggcagttcaatatccctctctgcatactcaacacc
atggacgggttaaaaaatgaggatgattttgcttctgacccattctggccagcccttcag
tgttttatggttattctggaccgacttggttctaagatctggtgtcaggtcgaccctatc
gtggcttttcagaccataactggagcagccagctacactgcagaaataagaaacatccag
caaaaaaccatgggggggaaggttaaggtagagccagaatttgacgacaacatggtgacc
tgcagtcaaatggtgtatgactgttatgcttcagaaaaaacaagcaaaacgaccagtaca
tcgtccagtggtggtatttgcaacaacatgatctatgaagatatgcagtccctggtcaac
gtacttgattcagaaatgggccagagcatgcgcgtctatggcagcacatttctgtggttc
attccttttgtacgttccataatggaccttccggagttcaatgcttcctacatcagacag
gtcattcactacctgtgtgataagataaacgtcagtcgacacatgctgaacggacagact
aacatgtgtgataaagtgaccgagtttttcacccgcatcctcattcagattgtcgagcta
catttaaatgaaggacgaatgggcaaactttcgcgctgtgcccacatatgggtggaagtg
attgtcatgtgtaccgtcctgtctgatgagttattcaattctagaccaccagactggatg
ggtgggattcacagagtcagttcaacctcgaacactctcggttacagactacctgcacct
gacagcggtgtttgtcccattattcagggctgcaacactttgattcggagtctgctgaaa
gaagggaagcgaactggatctgaccaacgttctaccagatatttgaattagctgaacaag
cagctgcgtggagatctgaacaaacggtggaagctaacaagttctgaatctgctgagctt
caacgatgtttagaaagcatcgtcaagtcaatgccagaaagacctgcttcgccaccttct
gccctgtctacaccatccatagaggcagctccaaatggtaatctttttaaaactacgacc
ttgcatgcactgcaacatgaagaccaagaggcaggtccaagcagagcaggagaagcgccc
actttcatcaaagaagagccactttgggattgcatctctgatgatgatttcttcagtagt
cttgaggacatcatggaggctaagaaggaaccttctgagccagtgatgatttcagaacgg
cagagacctcctgttgggttagcacacattaaaccagacctggaaaaactgcaggaactt
cgatccaggctgattgataaccagaatttaacaaagattgaagctatagcccaaagaatg
ccttgtaaacctgaggttgggggagacagtcttggccatgaagagctacccgtgacatca
aaacaagttcaaatggcagcagctaaagaagaatgtggttttggagatgagatagaggaa
gatgatgatgaacctcttgatatcagactggtccgcttgatgaaatcccaaagaaatgtt
ggaaaaaagcatgccattggcacctcaaaagaaaattttggtaccataattatctctgac
gatgaaatttctgaaagtggtgaaaggccaacaaatgagattgtgatgtcctgtgatgag
aataagtttccagtgtcacccgagagtccaggccgtgactatgatgatctcagtgaatca
caagtgtttgagtttgagacccagcaatatgtgacatccgcttgggaggattcagatttt
gacacatcggtcgtgactaggaagtttaagttcgactctgctctcaaaccacaggtgact
cctgttcctgatgaaggttctccctcgtggtgttcagagactgaagcggttcctgatgag
cacattgaaagggcctgtcagcaagcagaagagaagatcggacaacaaaagcagaacgaa
gaaaaaatcagacaacagcagcaaaccgaagaaaagatcagacaacaaatgcaaaaggaa
gaaaagatcagacaacaaatgcaaagggcagaaaagaaaagacaacagcaggaagcagaa
gagaagatcaggcaacagcagcagccacaagagccaacggtttcatgtgcatcttcctca
tccaaattgaacagtcctgtagagttcaatgataaattcatcaaacaaactactctgcca
gtcaaaaaccagaaaactctaccatccgaaaagagagacactgtgcagtccaagaaacct
ttaataattgaggccctggctcaaaaaatcaggcgccatcactggaaacgcaccctgagt
tctcaagatgatgaagaaccacctttaacttctgcatcctcataggagttgcctgctcca
tccacatcctccagctctatttcctcggcttgttttttatcctccacctcacgtggcatt
cctgctgtcgttccaccaaagaaggttcgtaaagccgtcgaaccggaatcaacagtggaa
cgtctgggattgaaaaaaagggaaaggaaggcctttgaactttctcagcggtccctggac
agtgttgctaaactgcgggggcatggccagaaagtgcaggtcgaacagcaacagataagg
cggcgagtgagtgccactaagacctccccacagaaacgtatggggaaaggcaacaagaaa
ctcctggcatctcaagatatgcagtttttccggcaaagccgtgataagcgtcaaaggcca
gcagtggtgtcccccacaacgccagctcccaaaccaaccacgagtacccaaccagggggc
atgcacccactgaaacctatgattggagaaaaagattttgcctttcattattctgctgac
ggtcaggatctggccgagggcagggaagtaagtactgcaacggaaattaaaacaaaccat
accaaagaaaactgtgacgctacatctgctgtggctgaacataacaggacagagtctgag
tacttaagaagcggtgagtttgctgatgctgctgtcaacaaaaaagtgaaaaaagatgct
gaggatgcaaaagaggaggcggatgatgaatggatgttcctcacccaaatggaacccaca
gacatggagctatgctctcaaatggagcaatacgaagaaaatgatgagagatttttcctt
aaacggagagatcctgtagacatggacctggacatggatgatgaagtcaacgagtccgat
accacagggcaaccagtgtctgcacataaaccttcacatcctatgcaaactcctgcacat
aaaccttcacatcctatgcaaaatcctaacacttctaaacgtattgattcaagtgatgat
aatttgttcttgaagcctgggatgtcccccatgtctcagaaaaaagccaagccttccacc
acgaaaatatacacccccagctcacgaagtgcctccctagtccaggaaatggaaaaagga
gataagccacctcctgtgtgtaatacttctaaagctaaagtagctcgtccgcctccagcc
atgccaccccccaaaacaactcctcctcctgtcccttctacacagtttgcacatccaatg
ccttttaggccaattgctcgaccacagagtcatgcccctaaatcaatcaccagtaccaaa
ataagctctacatctgaaccgccatcatacaaaacatacccgagacctgaagctccagtt
cacagaccagcgcacacaatggatcatagcccaaactttgacatttcgttcctgacccaa
gctattctcaaatgggaatatcggatgcttgagaactacaaaatatttggcagtccagat
gacctgtgccagcatccactgaaggaggtgccagttaaattcactagctacctagagtac
ttcaacactatgtaccctctgctgctggtaaatgcatttgaagagatggctaaagagtgg
cagaagaagggaagaattacactgtttgcaaaggtccagggtatggagtacagcaatcat
atagccagcaccaacttcatagctggccttaacctgaatgaagaaatgaaacagctgtat
cccaaagaagatgacctcgtactgctttggctgcctgagaacactggggcgtacacacac
gacgatcacgatatcctaggacatgctcatttcggttatgtgtcccggtccaacgtttcc
aacagaggtccaggtaccatctcaaccctaaacatgactgtccagactcgtggtaatgta
tcatcagtgaacgcccagcctgttcgctgtgaagtcattggatcgttggtcagtgcgttt
cgggagttccgtgcactgtgtctactgcgtaacggaaccatgttgcgtccacttctcact
tcacatgtgtcatacttcacacacagtcgggatatccagcagaagatggatacgccagag
tacaacgtcgatcagtccagagtaatagcctgtggtcttgccatgattaaaagaacacag
aagacacccaaatttttactgattcatggccctccaggaactgggaagagtaaaaccatt
ggcggtctgctgtacaaactactctcttcggttggtaacggagctgctccagtggggagt
ctttcctccaaggctcggaggacacgcattcttctctgtgctccctctaatgctgccatc
gacagtctgatgaagaaggtcattgtggtgtttaaagagaaatgccgtaacatcaacatt
ccacaaggtaattgtggtgacatcaatttggtgaggttgggaagtgaaaggaccatctca
aagtcactcaaacccttcagcctcgaccaccagaccagagctagagcacagcgagcccag
cagactgttgaagctgatatacagacacaaaaggaacaactggaccacagaattgatatt
ctgtctcggcgctgtgcaaaagtccagaaagattctacagagttcaacatactaactaaa
gagaagctgcagcttctaacagagagggaaggtcttagtcgaaagattaaagagtgtcgc
agtaagcggcaggagtctcaggctctcgtccttcagaacgctcatgtgatctgctgtacg
ctcagcaccagtgggagcatcatcctggagaatgccttccgtcgtctcggacacgagccc
ttcagctgcgtcatcattgatgaggctagtcaggctaaagaaacggagacgctgattccc
atgctgtatcggtgtcctgctgtaatccttgttggtgatcccaaccagcttcctccaacc
gtcgtctcgctgaaagccaaggagttgggctatgaccagtctcttatggcgaggttatat
aaaagcctccatcagtcgaatccacaaccatctcccgtcttcctcctcagcatgcagtat
cgcatgcatcccgacatatgcgagtttccctccaaatacatctacaacaacacgcttaag
aatgactgtgagaccgctcaaaagcgctgttccttcagctggcccttcaaaccctacaga
gtgttcgacgtgactgatgggagagagaacaaggagagagattcattttttaacctcaaa
gaggtgaagctggtggtgatgctgttaaaactgctaggggaaaagcagtctgtccgtgtg
ggcgtcataacacactataacgcccagaaacaaaaaatattggaggccctgagagagccg
ggcagcgaaaacaagcaccttcaggtggaagtagataccgtcgatggctttcagggtcga
gaaatggactgcattattgtgtcttgtgtaagagccagcagtgaaatgggttccattgga
tttgttggtaatcgccaaaggatgaacgtaaccattaccagagccaagtttagtctcttc
gtactgggacatctacgcacactcagggagcaaagcgattggggagcgttgatcgaagac
gccggaagacgtgggactgttatcaagacacgcgagcgagatttccgtaatgacgccaag
aagattcttaaacgggaaacgccgtctcgcagtctctctcatcctcctgttaacaggcct
agcactgtgaccacacctgcctatcgcactctcatggaaactggttctacctccacttca
cgaccccacctgagcagcgttgcttcacggcagcagccagttccaaagccaatacctctg
gactgccctagagacccaggaataactgaaaggcccacagatccccgctttgcagagtgg
cggccagaacagaggcaggacacggagaggagaagctcatctgtgtcacgccagtcggca
cagagagaccgttcaaatgatgcagactatagaaataccggccactctaacacataccct
tcgcagcatcatcgctcttcatcgcaaaggagataa
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integrated database retrieval system
