KEGG   Triplophysa rosa: 130570511
Entry
130570511         CDS       T09216                                 
Symbol
rad50
Name
(RefSeq) DNA repair protein RAD50
  KO
K10866  DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tros  Triplophysa rosa
Pathway
tros03440  Homologous recombination
tros03450  Non-homologous end-joining
tros04218  Cellular senescence
Brite
KEGG Orthology (KO) [BR:tros00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03440 Homologous recombination
    130570511 (rad50)
   03450 Non-homologous end-joining
    130570511 (rad50)
 09140 Cellular Processes
  09143 Cell growth and death
   04218 Cellular senescence
    130570511 (rad50)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tros03032]
    130570511 (rad50)
   03400 DNA repair and recombination proteins [BR:tros03400]
    130570511 (rad50)
DNA replication proteins [BR:tros03032]
 Eukaryotic type
  DNA Replication Termination Factors
   MRN complex
    130570511 (rad50)
DNA repair and recombination proteins [BR:tros03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   HR (homologous recombination)
    MRN(MRX) complex
     130570511 (rad50)
    BRCA1-C complex
     130570511 (rad50)
   NHEJ (non-homologous end-joining)
    MRX complex
     130570511 (rad50)
SSDB
Motif
Pfam: AAA_23 Rad50_zn_hook AAA_15 AAA_21 SbcC_Walker_B SMC_N ATG17_like AAA_29 AAA_13 AAA_22 AAA_16
Other DBs
NCBI-GeneID: 130570511
NCBI-ProteinID: XP_057216827
LinkDB
Position
LG19:complement(4912920..4942859)
AA seq 1312 aa
MSKIEKMSILGVRSFGVEDKDKQVISFFNPLTVLVGPNGAGKTTIIECLKYITSGDFPPG
SKGNTFVHDPKDAHETDVRAQIRLQFRDVNGDAIAVQRSMQSTQKGKKTEFKTLEGVITR
IKHGEKVSLSSKCAEIDREMISALGVSKAVLNHVIFCHQEESNWPLSEGKALKQKFDEIF
SATRYIKVLETLRQLRLKQANTVKSCQLELKYLKQNKDKAQEIRELLSTKEGQLASSKET
VQRIESQIDPLENRLNDIDDSLSKVMKLDNDIKALDSRKKQMEDDNRELEEKMEQVFQGT
DEQLQEMYQNHQRTVKEKERKLVECQRELERAGRECQRMNRIKSDLLVEQGRLQLEADRH
TQNIKKRDSQVKNLASFLELEGYDRTPLSERQLQSFHRQVKERLDQDTEALNQSLRDMQE
KEAQKQRNIDDLRDKKTGLERTVELKRDMQAKKQQELKNIKSDLQRLEGSSSRLQELDTE
LQKAERELDNTMQACTVDSLKAEVIELQKEKTELDQAQRKLDQEMEALNTHTTARTQMDM
LKKDKMDKEEQVRKIKSRHNEDLVSLLGHFPNKRQLEDWIHTKSREINTTRDRLSKLNKE
LASGEQKRSHYTAEIKRKEEQLSSYEERLFNVCGSQDFESDLGRLQDDLDKCSKQRAMLA
GATAVYSQFISQLTEEGEPCCPVCQRVFPSEAELQDVINDMQSKLRLVPDKLKNTEQDLK
RKERRRDEMMALKPIRQSIMELQEKELPELRNKLQSSNRDIERLKGDIEELETLLSTLTS
EEDTAKACLQDISLMDRYQLDLKDVERKIAQHAARLQGVDLSRNMQQVSQEKQETQHRLD
TTCSKIELKRKLIQDQQEQIQVLKSRVNEIRGEKLQISSDMQKRQQLEEQCVEVSTEIQT
LHRDIREAKDQLSPLAASLEKLQQDKQDLAERRRHRQEEGQEKINTIKEKVKNLTLIERE
ITRYIEEGKDSYKEQKETELQEVDKQLHEAEKQREKINKDMGNFRQDIDTQKVQERWLQD
NLTLRKRVEELKEVSRKRDLLLKEMGNMQVLQLRNERREVDRKLEDLKKNRSVALGRQKG
YEDEILRFRKELNENQYCRAEDIYRDKMIEMRTTELANKDLDIYYKALDQTIMKFHSMKM
EEINKIIRDLWRSTYRGQDIEYVEIRSDVDENASAGVKRRTYNYRVVMVKGDAALDMRGR
CSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDRENIESLAHALVEIIKSRSRQR
NFQLLVITHDEDFVELLGRSNYVEHFYRIKKNKDQCSEITKCSINTLNTFLR
NT seq 3939 nt   +upstreamnt  +downstreamnt
atgtcaaagatagaaaagatgagtattcttggtgtgaggagttttggagtggaagataaa
gacaaacaagtgatatcatttttcaatcctctgacagtcctggtgggacctaatggagct
ggaaagacgaccatcatcgagtgtctcaagtacatcacttcaggagactttcctcctgga
agcaaaggaaacacttttgtccatgatcccaaagatgcccatgagacggacgtgcgagcg
caaatcagactccagtttcgagatgtaaatggtgatgccatagctgtccagagatccatg
caaagtacacagaagggcaagaaaactgagttcaaaactcttgagggtgtcattaccaga
atcaagcacggggagaaagtaagtctgagctctaaatgtgctgaaatagaccgtgagatg
atttcagcgctgggcgtctctaaagccgttctcaaccacgtcatcttctgtcaccaagag
gagtccaactggcctttgagcgaaggcaaagccctcaagcagaagtttgatgagatcttc
tcagccacaaggtacatcaaagtattggagaccctgcggcagctgaggttgaaacaggca
aacacagttaaatcctgtcagctggaactcaaatatctcaaacagaacaaagataaggct
caggagatcagagagctgctgtccactaaagaaggtcagctcgcttcctccaaagagact
gtccagcgcatcgaaagtcagatcgaccctctggagaatcgacttaatgacatagatgac
agcctcagcaaagtgatgaagttggataatgacatcaaagctctggacagcaggaagaaa
cagatggaagatgataaccgtgaactagaggaaaagatggagcaggtgtttcaaggtacc
gatgagcaacttcaggaaatgtatcagaaccatcagcgtaccgtgaaggagaaggagcgg
aagctagtggagtgccagcgtgagctagagcgagctggacgagagtgtcaaagaatgaac
cgtatcaaatccgacctcctcgttgagcaaggtcgcctgcagttggaggcagacagacac
acacagaacataaaaaagagggacagccaggtgaagaatttggcatctttcctggagctg
gagggctatgatcggacccctcttagcgagagacagctccagagcttccacagacaggtc
aaagaaagactggatcaggacacagaagctctcaaccaaagcttgcgtgatatgcaagag
aaggaggcacagaagcagcgaaacatagatgatcttcgtgataagaagacaggcctggag
agaaccgttgagctgaagagagacatgcaggccaagaaacagcaggaactgaagaacatc
aagtctgatctgcagagactggagggctcatctagcagactgcaggagctggacactgag
cttcagaaagcggagcgtgagcttgataacaccatgcaggcgtgtacagtagacagtctg
aaggcagaagtgattgaactacaaaaggagaaaactgaactggatcaggcccagcgcaaa
ctggatcaggagatggaagcgctcaacacgcacaccacagctcgtacacagatggacatg
ttgaagaaggacaagatggataaagaagagcaagtgaggaagatcaagtcaagacacaat
gaagatctagtgtctctgttaggacactttccaaacaagagacagctggaagactggatc
cacacgaaatccagagagatcaacactacgagagatcggctcagcaaactcaacaaagaa
ctggcgtctggagaacagaagaggagtcactacacggcagagatcaagcgtaaggaagaa
cagctgagcagctatgaggagaggctgtttaatgtgtgtggaagtcaagactttgagtca
gacctcggcagactgcaggatgatctcgataaatgttccaaacagagagccatgctggcg
ggcgccacagccgtgtacagtcagttcatcagtcagctgacggaggagggtgaaccatgc
tgtcccgtatgtcagcgcgtcttcccgtcagaggccgagctccaggacgtcatcaacgac
atgcagtccaaactgcggcttgtcccggacaaactgaagaacaccgagcaggacctgaag
aggaaagagcgcagacgggatgaaatgatggcgctaaagccgatcagacagtctatcatg
gagcttcaggagaaagagctgccggagctcaggaataaactccagagttctaatcgagac
attgagaggctgaagggagacattgaggagctggagacactgctgtcaacactcacgtct
gaggaagacacagccaaagcctgtctgcaagacatctccctcatggaccgctaccagctt
gacctgaaggacgtggagaggaagatcgctcagcatgcggccagactgcagggagttgac
ctcagtcgcaacatgcagcaggtcagccaggagaaacaagagacccaacaccgcctggac
acaacctgcagtaagatcgagctaaagaggaaactgatccaggaccagcaggagcagatc
caggtcttgaagagcagagtcaacgagatccgcggagagaagcttcagatctccagcgac
atgcagaaacgtcagcagctggaggagcagtgcgtggaggtctccaccgagatccagacg
ctccatcgagacatccgggaggcgaaggatcagttgtctcctctagctgcttctctggag
aaactccagcaggacaaacaggacctcgctgaacgcaggaggcacagacaagaggaaggc
caggagaagataaacacgattaaggagaaagttaaaaacctgactctaatcgaaagagag
atcaccaggtacattgaagagggcaaagacagctataaagagcaaaaagaaaccgagcta
caagaggtggataaacagctacatgaggccgaaaaacaacgagagaagattaataaagac
atgggcaactttcgccaagacattgacactcagaaggttcaggagcgctggctccaggat
aacctgaccttacggaaacgcgtggaagagctgaaggaggtttccagaaaacgtgacctt
ttgctcaaggagatgggcaacatgcaggtcctgcaactgcgcaacgagcggcgagaagtg
gaccgaaagttagaggatctgaaaaagaaccgcagcgtggctctcggtcgacagaagggc
tacgaggacgagatcctgcgtttccgtaaggagctcaacgaaaaccagtactgccgagcg
gaggatatctacagagacaaaatgatcgagatgagaacgacggagctggccaataaggac
ctggatatttactacaaagccctagaccaaacaatcatgaagtttcacagcatgaagatg
gaggagattaataaaatcatcagagatttgtggaggagcacatacagaggacaagacata
gagtatgtggaaatccgctctgatgtggatgagaacgcatctgctggcgtcaaaagacgg
acgtataactatagagtggtcatggtgaaaggagacgcagctttggacatgcgaggacgc
tgcagtgctggacaaaaggttcttgcgtccctcataatacgactggcgctggctgagacg
ttctgtctgaactgtgggattctggcactggatgagcccaccaccaatttagacagagag
aatattgagtctttggcacacgcccttgtggagatcatcaagagtcgatctcgccagcgt
aacttccagctgctggttatcactcatgatgaagatttcgtggagctactgggacgatcc
aactatgtggagcatttctacaggatcaagaagaacaaggaccagtgctcggagatcaca
aaatgcagcatcaacacactcaacacattcctgcgctga

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