Triplophysa rosa: 130570730
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Entry
130570730 CDS
T09216
Symbol
smarcb1b
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1b isoform X1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
tros
Triplophysa rosa
Pathway
tros03082
ATP-dependent chromatin remodeling
tros03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
130570730 (smarcb1b)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
130570730 (smarcb1b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tros01009
]
130570730 (smarcb1b)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tros03021
]
130570730 (smarcb1b)
03036 Chromosome and associated proteins [BR:
tros03036
]
130570730 (smarcb1b)
Protein phosphatases and associated proteins [BR:
tros01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
130570730 (smarcb1b)
Transcription machinery [BR:
tros03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
130570730 (smarcb1b)
SWI/SNF complex
130570730 (smarcb1b)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
130570730 (smarcb1b)
PBAF complex
130570730 (smarcb1b)
SWI/SNF complex
130570730 (smarcb1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
130570730
NCBI-ProteinID:
XP_057217126
LinkDB
All DBs
Position
LG19:complement(16145007..16153242)
Genome browser
AA seq
366 aa
AA seq
DB search
MALSKTFGQKPIKFQLEEDGDFFMIGSEVGNYLRMFRGSLYKRYPSLWRRLASVEERKKV
VASSHATSVTLLKASECEEIFEGNDEKYKAVSISTEPPAYLREQKAKRNSQWVPTLPNSS
HHLDAVPSSTTINRNRMGRDKKRTFPLCFDDHDPAVIHENASQAEVLVPIRLDMEIDGQK
LRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDSILDEQTD
QRVIIKLNIHVGNISLVDQFEWDMSEKENSPETFALKLCSELGLGGEFVTTIAYSIRGQL
SWHQRTYAFSENPLPTVEIAIRNTGEADQWCPLLETLTDAEMEKKIRDQDRNTRRMRRLA
NTAPGW
NT seq
1101 nt
NT seq
+upstream
nt +downstream
nt
atggcgttgagtaaaacatttggacaaaaaccaataaaatttcaactcgaggaagatggg
gacttttttatgataggttcagaggtcggcaactatcttcgtatgttcagaggctctctg
tacaagcggtacccgtcgctatggagacgcctcgcatccgtggaggagaggaagaaggtt
gtagcatcatctcacgccaccagtgtgaccctgctgaaggcatcagagtgtgaagaaatc
ttcgagggcaatgatgagaagtacaaggcggtgtcgatcagcacagaacctccagcgtat
ctcagggagcagaaggcaaagaggaacagtcagtgggtgcccaccttacccaacagctcc
catcacttggacgcagtgccttcctccaccaccatcaaccgaaatcgaatgggacgtgac
aaaaaaaggactttcccattatgtttcgatgaccatgaccctgctgttatccatgaaaac
gcttctcaggcagaagttctggtgcccatccgtctggatatggagatcgatgggcagaag
ctgagagatgccttcacttggaatatgaatgagaaacttatgactccagagatgtttgct
gagatcttgtgtgatgacctggatctgaatcctctcgctttcgtccctgccatcgcctct
gctattagacagcagattgagtcttaccccaccgacagcattttggacgagcagacggac
cagagggtcatcatcaagctaaacatccacgtaggaaacatctcgctggtggaccagttc
gagtgggacatgtcggagaaggaaaactcaccagaaacgtttgctttgaagctctgctct
gagctgggcctcggaggagagttcgtcaccacaattgcctacagcatccgaggacagctc
agctggcaccagaggacgtacgccttcagtgagaaccctttacccacggtggagattgct
attaggaacacaggtgaagccgaccagtggtgtccactgttggagactctgacagacgca
gagatggagaagaaaattagagatcaggacagaaatacaagacgcatgcgacgacttgcc
aacactgcccccggctggtag
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