Triplophysa rosa: 130570898
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Entry
130570898 CDS
T09216
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
tros
Triplophysa rosa
Pathway
tros04510
Focal adhesion
tros04512
ECM-receptor interaction
tros04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
130570898 (col2a1b)
04518 Integrin signaling
130570898 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
130570898 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tros00536
]
130570898 (col2a1b)
Glycosaminoglycan binding proteins [BR:
tros00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
130570898 (col2a1b)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
130570898
NCBI-ProteinID:
XP_057217362
LinkDB
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Position
LG20:complement(395630..478764)
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AA seq
747 aa
AA seq
DB search
MMVWTHSWTFLLFIAFLAVVSCQEEDDQDPGSCMQDGQRYSDKDVWKPEPCRVCVCDTGT
VLCDEIVCEELKDCPKPEIPFGECCPVCGADQPSSSSGLPGVKGQKGEPGDITDVVGPRG
QAGPMGPPGEQGPRGERGDKGEKGSPGPRGRDGEPGIPGNPGPPGPPGPNGPPGLGGNFA
AQMAGGFDDKSSAQMGVMQGPMGPMGPRGPPGPNGAPGPQGFQGNPGEAGEPGSAGSMGP
RGPSGPSGKPGDDGEAGKPGKSGERGPLGPQGARGFPGTPGLPGIKGHRGYSGLDGAKGE
SGAVGAKGEAGSPGESGAPGPMGPRGLSGERGRPGPSGAAGTRGNDGLPGPAGPPGPVGI
VGANGFPGSPGTKGEAGPTGARGPEGAQGPRGESGVPGAPGPSGVSGNPGTDGNPGAKGS
VGAPGISGSPGFSGPRGPPGPQGATGPLGPKGQSGDSGLAGFKGEAGPKGEIGNAGPQGA
LGPAGEEGKRGPRGEPGALGPIGPSGERGAPGNRGFPGQDGLAGPKGAPGERGVPGGSGP
KGASGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAPGEDGRPGPLGPQGARGQPGI
MGFPGPKGANGEAGKAGEKGLAGAPGLRGLPGKDGETGAGGPPGPAGSAGERGEQGQPGP
SGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGGAGPAGLQGPRGL
PGTPGSDGAKVRKLLDCIVAVRALKHS
NT seq
2244 nt
NT seq
+upstream
nt +downstream
nt
atgatggtgtggacgcattcctggacttttcttctctttattgcatttttggctgttgtg
agctgtcaggaggaggatgaccaggatccaggtagctgtatgcaggacggccagcgctat
agtgacaaagacgtgtggaaaccggagccgtgtcgtgtttgtgtgtgtgatacgggcacg
gtcctgtgtgatgaaatcgtctgcgaggagctgaaggactgtcccaaacccgagatcccg
tttggggagtgctgcccggtctgtggcgctgaccagccgtcctcctcctccggattgcca
ggtgtgaagggacaaaagggggaaccgggagacataacagatgttgtggggccgagggga
caggccgggcctatgggaccgccgggagaacaaggaccccggggagagagaggagacaag
ggcgaaaagggaagtcctggcccccgtggcagagatggtgagcctggcatccctggaaac
cccggaccccctggacccccggggccaaacggaccccctggccttggtggaaactttgcc
gctcagatggccggtggatttgatgataaatcttcagcacaaatgggcgtgatgcaggga
ccgatgggaccgatgggaccaagaggaccaccaggccccaatggagctcctggcccacaa
gggtttcaggggaaccccggagaggccggagagcccggatcagccggctcgatgggtccc
cgtggcccctccggtccctcaggaaaacctggagatgatggggaagcaggtaaacctggt
aaaagtggtgaacgtggacctcttggacctcagggagcccgtggatttccaggaacacca
ggtctacctggaataaagggacatcgaggttattcaggtcttgatggtgctaaaggagaa
tctggagctgttggagctaaaggtgaagctggctcgcctggagagagcggggctcctgga
ccaatgggtcctcgcggtctgtctggtgaacggggacgtccaggaccctcaggagctgct
ggcactcgtggaaatgatggtttgcccggtcctgctggtcctccgggtccagtaggcata
gttggagctaatggtttcccaggatcccccgggacgaagggtgaagcagggcccaccggt
gcccgtggacctgagggagcacaaggacctcgtggagagtcgggtgtcccgggagctcca
gggccttctggagtctccggtaaccccggaactgatggcaaccccggcgccaagggatca
gtgggcgctcctggtatttccggttctcctggtttttcgggtcctcgtggccctcctgga
cctcagggagcaaccggtccactcggaccaaagggacagtctggtgattcgggtctggct
gggttcaagggtgaagcgggtcctaaaggagagattggtaatgctgggcctcaaggtgcc
ctgggtccggctggagaggaaggtaagcgaggacccagaggagagcccggtgctcttgga
cccataggaccatcgggagagagaggagctcctggtaacagaggttttcctggacaagac
ggtttggccggtccaaagggcgctccgggtgagcgtggagttccaggaggatcaggtcct
aaaggagccagcggtgatcccggacggcctggagaacccggtctgcccggtgccagaggt
ctgacgggacgtcccggtgatgctggcccacaggggaaagtgggtccgtctggagctcct
ggtgaagatggccgtcctggacccctcggccctcagggtgcacgtggtcagcctggaatc
atgggattccccggacccaagggtgccaatggtgaggctgggaaagcgggagagaaagga
ctcgccggagctcccggtttacgtggtctgcctggaaaagatggtgagacaggtgctggg
ggacctcctggaccagctggctctgcaggagaacgaggagaacagggtcagcctggacct
tctggcttccaggggctacccggtccccctggtccccctggtgaaggaggtaaacctggt
gatcagggtgttccaggagaagctggcgctgctggggccacaggacctcgaggtgagcgt
gggttcccgggagagagaggaggtgcaggaccagcaggcctccaagggcctcgcgggcta
ccaggaacacctggatctgatggagcgaaggtaaggaaattacttgattgtattgttgct
gtaagggcattaaaacacagctga
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