Triplophysa rosa: 130571046
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Entry
130571046 CDS
T09216
Name
(RefSeq) eukaryotic initiation factor 4A-III
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
tros
Triplophysa rosa
Pathway
tros03013
Nucleocytoplasmic transport
tros03015
mRNA surveillance pathway
tros03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130571046
09122 Translation
03013 Nucleocytoplasmic transport
130571046
03015 mRNA surveillance pathway
130571046
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130571046
03041 Spliceosome [BR:
tros03041
]
130571046
03009 Ribosome biogenesis [BR:
tros03009
]
130571046
03012 Translation factors [BR:
tros03012
]
130571046
Enzymes [BR:
tros01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
130571046
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
130571046
mRNA cycle factors
Stress granule specific factors
130571046
Spliceosome [BR:
tros03041
]
Complex C
Other components
EJC/TREX
130571046
Ribosome biogenesis [BR:
tros03009
]
Eukaryotic type
90S particles
Helicases
130571046
Translation factors [BR:
tros03012
]
Eukaryotic type
Initiation factors
eIF-4
130571046
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_22
Cas3-like_C_2
AAA_30
Flavi_DEAD
Motif
Other DBs
NCBI-GeneID:
130571046
NCBI-ProteinID:
XP_057217700
LinkDB
All DBs
Position
LG20:complement(20855863..20859475)
Genome browser
AA seq
439 aa
AA seq
DB search
MRDTRGVLPFGLQTRSNALSYFDSRFVLNLTAIMAAAPVPVRKRIMKEEDMTKIEFETSE
EVDVTPTFDTMGLREDLLRGIYAYGFEKPSAIQQRAIKQIIKGRDVIAQSQSGTGKTATY
CISVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDYMNVQCHSCIGGTNVGEDIRK
LDYGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYLPPAT
QVCLISATLPHEILEMTNKFMTDPIRILVKRDELTLEGIKQFFVAVEREEWKFDTLCDLY
DTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSGASRVLI
STDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKNDDIRILRDI
EQYYSTQIDEMPMNVADLI
NT seq
1320 nt
NT seq
+upstream
nt +downstream
nt
atgcgcgacacacgcggcgttcttccgttcggccttcagacgcgttcgaacgcgctttca
tatttcgactcgcgctttgtattaaatctgaccgcaataatggccgcagcccccgttccc
gtgaggaaaaggatcatgaaggaggaagacatgaccaagatcgagtttgagacgagtgaa
gaagtcgatgtgacgccgacgtttgacacgatgggcctgagggaagatttactgcgcggg
atctacgcatacggttttgagaagccatcagccattcagcagcgagccattaaacagatc
ataaagggaagagacgtcattgcccagtcacagtccggcactggtaaaacagccacatac
tgtatatcggttctgcagtgtttggacatccaggttcgagagactcaggctctgattttg
gctccaactcgagagttagcaggacagattcagaaggtgctgctggcgttgggtgactac
atgaacgttcagtgtcactcatgtatcggaggcacaaatgtgggggaagacatcagaaag
ctggactacggtcagcatgtggtggccgggactcctggaagagtgtttgacatgatccgc
aggaggagtctgagaacacgggccattaagatgctggttctggatgaggcagatgaaatg
cttaacaaaggttttaaggagcagatttatgacgtgtacaggtatcttcctccggccact
caggtgtgtttgatcagtgccacgctgccccatgagattctagaaatgaccaacaagttc
atgacagaccccatccgtatcctggtcaaacgtgatgagttgactctggaggggatcaag
cagtttttcgtggctgttgagcgagaggagtggaagtttgacacgttgtgtgacctgtac
gacacgctgactatcacacaagccgtcattttctgtaacaccaaacgcaaggtggactgg
ctgacagagaagatgagagaagcaaacttcactgtgtcatctatgcatggagacatgcca
cagaaagagagagagtctatcatgaaggagttcagatctggagccagtcgagtgttgatc
tccacagatgtttgggccagaggtctggatgttcctcaggtttctctcatcatcaactat
gatctgcccaacaacagagagctgtacattcacaggattggtcgatcggggcgttacggc
aggaagggtgtggccatcaactttgtgaagaatgatgacattcgtatcctgcgtgatatc
gagcagtactactccacacagatcgatgaaatgcccatgaacgttgctgatctgatctga
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