Triplophysa rosa: 130571064
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Entry
130571064 CDS
T09216
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5 isoform X1
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
tros
Triplophysa rosa
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tros03036
]
130571064 (chd5)
Chromosome and associated proteins [BR:
tros03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
130571064 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
DUF1087
PHD
Chromo
PHD-1st_NSD
HDA2-3
ResIII
PHDvar_NSD
HTH_Hrp3
DEAD
PHD_2
Chromo_MIT1
AAA_22
Motif
Other DBs
NCBI-GeneID:
130571064
NCBI-ProteinID:
XP_057217735
LinkDB
All DBs
Position
LG20:complement(14952752..14978591)
Genome browser
AA seq
2003 aa
AA seq
DB search
MPGSLSNEEEGQDDMDFEDDVPDEDEEGERERSSERSVPLSPLERFFHEDSVNPHKKKKP
SKITEGKEEKPKLKKKKKKEGLPCELDDMSDREDRSHRSGSESSTYGTLKKKKKKPKEKK
EKKTKQRKKDEEEDDDDDDDGNMKEPKSSSQLMQEWGLEDVQYAFSEDDYKTITNYKAFS
QFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGTSATAVAAAVAAAVETVNVAPP
ICIRSIQQILPSGPIKKAKTKEGKGPGAKKKSKPVKETKKKGKPKKSKSKAGQGGKRKKG
SSSEEDFLDDFSDFDDISIHSASVRSDTSAAPKKKSNRRGRKKRKREDGDGYETDHQDYC
EVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDDEEEEDEA
AGEEEDDHMEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLKG
KVQKILHWAWGDPPLPPEVPLGQDGEKVDSLAKPPLKGRPERQLFVKWAGLSYWHCSWVN
ELQLELYHTVMYRNYQRKNDMDEPPPYDYGSGEEELNNEKRRSKDPQYAAMEERFYRYGI
KPEWMIIHRIVNHSFDKDGDVHYLIKWRDLPYDQCTWETDDFDVPEYDSFKQAYWDHREQ
VLGESHNPLLFRKGKPLKDEGKRREPLPDTPVVDPTIKFEQQTWYIDDTGGTLHPYQLEG
LNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWERE
FEMWAPEFYVVTYTGDKESRAVIRENEFTFEDSAVKTGRKVFRMKKDTPIKFHVLLTSYE
LITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEELF
HLLNFLTPERFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKNMPSKTELI
VRVELSPMQKKYYKFILTRNFEALNSKGGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEAP
VLPNGSYDGNHLVKSSGKLTLLQTMLKKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYKY
ERIDGGITGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLATADTVVIYDSDWNPHND
IQAFSRAHRIGQNKKVMIYRFVTRASVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSKQ
ELDDILKFGTEELFKDDVEAARTIMGDNKDGEEGSVIHYDNDAISKLLDRSQDATEDTEI
QNMNEYLSSFKVAQYVVREEDEEEEVQREIIKQEENVDPDYWEKLLRHHYEQQQEDLARN
LGKGKRIRKQVNYNDASQEDQEWQDDLSDNQSEYSVGSEDEDEDFEERPEGGRRHSRRQL
KSDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKS
EKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHV
NGKFSTPDLIPVGLELKKLNDSISSDPNTPVPASPVPTQPSTPVSSDKTELVSGSQEDKE
ITEPESAKSSDPEPTMPEPSPAPEKTNESEETKSSNAGEKRQEESGKNDTPPVNSEPSSN
QTQLSTKSSEQSANQTALDSGKGKETSPERGENKPSPAKSEDKEPKTANPDDVKSEEPSE
NQLNGEKDVRDDTDESHKDDKNSVKARFMFNIADGGFTELHTLWQNEERAAVSSGKIYDI
WHRRHDYWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEINKGNYLEMKNKFLARRFKL
LEQALVIEEQLRRAAYLNMTQDPSHPAMALNTRFAEVECLAESHQHLSKESLAGNKPANA
VLHKVLNQLEELLSDMKADVTRLPSMLSRVPPVSARLQMSERGILSRLTSRGNEPPPQQP
FPQGSFGCSQMYNSSFAGGFRGPGGTAMVNYSQMPLGPYVSVSSNGPSGPTSHLEKRSSD
VLRDVPTPDLKSVKPSDVICIED
NT seq
6012 nt
NT seq
+upstream
nt +downstream
nt
atgcccggatcgctgagcaacgaagaagagggacaagacgatatggattttgaagacgac
gtgccagatgaggatgaagaaggtgagcgtgagcggtcgagcgaaaggagcgtccccctg
tcaccgctagagaggttcttccacgaggactctgttaatccgcataagaaaaagaaacca
agcaagataacagagggtaaagaagaaaagcccaaactgaagaaaaagaagaaaaaggag
ggccttccttgcgagctggacgacatgtctgacagagaagaccgcagtcacagatccggg
agcgagagcagcacctacggtaccctgaagaagaagaaaaagaaacccaaagagaagaaa
gagaagaaaacaaaacagcggaagaaagatgaagaggaggacgatgatgatgacgacgat
ggaaacatgaaggaaccaaagtcatccagtcagctgatgcaagaatggggacttgaagac
gtgcagtatgctttttcggaggacgactataaaacaatcactaactacaaagcctttagc
cagtttcttaggccccttattgccaagaagaaccccaagatccccatgtcgaaaatgatg
acggtacttggagcaaaatggagagagttcagcgcaaacaaccctttcaaaggcacctct
gcaactgctgtggccgcggctgtggcggctgctgtggaaacggtcaatgtggccccgccc
atctgtattagaagtatccaacagatcttaccatctggaccaatcaaaaaagccaaaacc
aaagagggaaaggggcctggtgctaagaaaaaaagtaagccagtgaaagaaacaaaaaag
aaagggaaaccgaagaagtccaaatcgaaagcaggccagggtggaaaaaggaaaaaaggc
tcttcgagtgaggaggacttcctggatgacttttctgactttgatgacatcagcattcac
agtgcctctgtacgctcagacacgtcagcagcaccgaaaaagaaatcaaaccgccgagga
cgaaaaaaaagaaaaagagaggatggagacggttacgagacagaccatcaagactactgt
gaggtttgtcaacaaggaggagagatcattctatgtgacacctgtcccagagcatatcac
ctggtgtgtctggatccagaactggaaaaagcccctgagggaaaatggagctgcccccat
tgtgaaaaagaaggcatccagtgggaagccaaagatgatgaggaggaggaagatgaggct
gctggtgaggaggaagatgaccatatggagttctgcagagtttgtaaggatgggggagag
ctgttgtgctgtgacacctgcccttcctcatatcacatccactgcctcaacccaccactg
cccgagatccccaatggagagtggctttgtccacggtgcatgtgtccaccactaaaaggg
aaagtccaaaagattctacactgggcatggggggatcctcctctacctcccgaagttcct
cttgggcaagatggagagaaggtggatagtttagccaaacccccactgaagggccgtcca
gagaggcagctgtttgtgaaatgggctgggctgtcttactggcactgctcgtgggtcaac
gaactacagttggaactatatcatacagtaatgtaccgtaactatcagcgcaagaacgac
atggacgaaccacctccatacgactatggctctggggaggaggagcttaacaacgaaaag
aggaggagcaaagatcctcagtacgcagccatggaggaacggttctaccgttacggcatc
aagccagagtggatgattattcacagaattgttaaccacagttttgataaggatggagat
gtacactacctgataaagtggagagacctgccatatgatcagtgcacctgggagactgat
gacttcgacgtcccagaatatgacagctttaagcaggcctactgggaccacagggagcag
gtgctcggtgagagccacaacccactgctgttcagaaaaggaaagcctctaaaagatgaa
ggaaagaggagagaaccccttccagacactccggttgtggatcccaccatcaaatttgaa
cagcaaacctggtacatcgatgacacagggggcactttgcacccgtaccagctagaaggc
ctgaactggttgcgcttctcatgggctcaaggaactgatacgatcttggccgatgaaatg
gggcttggcaagactgtgcagactatagtgttcctgtactccctctacaaagagggtcac
tccaaagggccctttctggtcagcgcaccactctccaccatcattaactgggaaagagag
tttgagatgtgggctccggaattctatgtggtgacttacacaggggacaaagagagcagg
gccgtcatacgtgagaatgaatttaccttcgaggacagtgcagtcaaaacaggacgcaag
gttttccgcatgaagaaggacactccaataaagtttcatgtgctgctgacatcatatgaa
ttgatcaccattgatcaggctattcttggctctattacctgggcctgtctggttgtagat
gaggcccaccggctgaagaataaccaatcaaagtttttcaggattctgaatggctacaaa
atctactataagctgctcctgactggaacccctttgcagaacaatctagaagagcttttt
cacctgctcaactttctcacccccgagcgcttcaataacctggaaggttttctggaagag
tttgcggatatctcaaaagaggaccagattaaaaaactacatgacttactgggaccacac
atgctcaggaggctgaaggctgacgtgttcaagaacatgccatcgaaaaccgagctcata
gtgcgagtagagctgagcccaatgcagaagaaatactacaagttcattttaacacggaac
tttgaagcgttaaattccaagggaggtgggaatcaagtgtcgcttttgaacatcatgatg
gacttgaagaaatgttgcaaccacccttacctgtttccagtggctgcagtggaagctcct
gtcttaccaaacggttcgtatgatggtaaccacctggtgaaatcctcaggcaaactcact
ctgcttcaaacgatgctcaaaaaactcaaggatgaaggccaccgagttcttatattctct
cagatgacaaagatgttggacctgctagaggacttcctggagtttgaggggtataaatac
gagcgtattgatgggggcatcactggggggttgcgtcaagaggccatcgatcgttttaat
gcacccggggcgcagcagttctgttttttactttctacacgtgctggaggattgggcatc
aatctggcaaccgcagacacagtggttatatatgattctgactggaacccacacaatgat
attcaggcattcagcagggcacaccgtatcgggcaaaataagaaagtaatgatctatcgt
tttgtaacacgggcatccgtagaggagcgtatcacccaggtggccaagcgaaaaatgatg
ctgacacaccttgtggtgcgaccaggcctgggctccaaaacaggctctatgtccaaacag
gaattggatgatatcctgaagtttggcaccgaggagctttttaaagatgatgttgaagct
gccaggactataatgggagataataaagacggagaagagggcagtgtgatccactatgat
aatgatgccatctctaaactgctggaccgcagtcaggatgccacagaagacacagagatc
cagaacatgaatgagtacctcagctcctttaaagtggctcagtatgtagtaagagaggaa
gacgaagaggaggaggtccagagggagattattaagcaagaagagaatgttgatccagac
tactgggagaagctcttgaggcaccattacgagcagcagcaggaagatttggcaagaaac
ctgggcaaaggaaaacgcatccgcaaacaggtcaactacaatgacgcctcccaggaggac
caagagtggcaggatgatctctcagacaaccagtctgaatattccgttgggtctgaggat
gaggatgaagattttgaagagcgtcctgaaggaggacgcagacattctcgcagacaatta
aagagcgatcgggacaaaccgttgccaccgctgctggcgagagttggaggaaatatagaa
gtgttgggatttaacgcccggcaaaggaaagccttcctaaacgccatcatgcgctggggg
atgcccccacaagatgccttcaactctcactggctcgtccgtgacctgagagggaaaagt
gagaaggaattcagggcttatgtgtctctgttcatgaggcacctgtgtgagcctggggca
gatggagccgagacgttcgctgatggggtcccaagagaggggctgtcccgccaacacgtt
ctcacccggatcggtgtcatgtctttagtccgcaagaaggttcaggagtttgagcatgtg
aatgggaagttcagcacaccagatttaattcctgttggattagagcttaaaaaactcaac
gatagcatctcatcggaccccaacacacctgtcccagcaagtccggttccaactcaaccc
agcactcctgtctcctcagataaaactgagttagtatccggttctcaagaagacaaggag
attacggaaccagagagcgccaaatcatcagaccctgagccaactatgccagaaccctcc
cctgcaccagagaagaccaatgagagtgaagagacgaagagcagcaacgcaggggagaaa
cgacaggaagagagtgggaaaaatgacaccccacctgtcaattcagagccatcgtccaat
caaacacagctgtccactaaatctagtgagcagtcagccaatcagacagctttagactct
ggtaaagggaaagaaacttctccagagagaggtgaaaataaacccagtccagcaaaatca
gaagataaggagccaaaaacagctaatcccgatgacgtgaaatccgaagaaccttctgag
aaccagctgaatggagagaaagacgtgagggacgacacggacgagagccacaaagatgac
aaaaacagcgtcaaggcacgcttcatgttcaacatcgcagatggaggattcacagagtta
cacacactgtggcagaacgaggaacgcgcagctgtgtcgtctggcaaaatttatgacatc
tggcaccgtcgccatgactactggctgctggctggcatcgtaacacacggctatgcccga
tggcaggacattcagaatgacccacggtatgccatcctcaacgagccttttaagactgaa
ataaacaaaggaaactacttggagatgaagaacaaatttctcgcaaggcgatttaagctc
ttggaacaagctttggtaattgaggaacagctacgacgtgcagcctacctgaacatgact
caggaccccagtcaccccgccatggccctcaacacacgcttcgctgaggtggaatgtctg
gctgagtcccatcaacacctctccaaagagtcactagctggaaacaagccagccaacgcc
gtgctgcacaaagttctgaaccagctggaggagctgttaagcgatatgaaggccgacgtg
acgcggttgccctccatgctctcgcgggtgccgcccgtgtccgcccggctgcagatgtcc
gagcgcggtatactcagcaggctcaccagccggggcaacgagccgccacctcagcagccg
ttccctcagggctcatttggatgttctcagatgtataatagcagttttgccggagggttc
cgaggacctggaggcaccgcgatggtgaactacagccagatgcccctggggccatacgtc
agtgtctcctccaatggaccctcgggcccaacaagccacctggagaagaggtctagtgat
gttctgagagatgtgcccacccctgacctaaaatcagtgaaacccagtgatgtcatatgc
atcgaggactaa
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