Triplophysa rosa: 130572045
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Entry
130572045 CDS
T09216
Symbol
hbs1l
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
tros
Triplophysa rosa
Pathway
tros03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tros00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130572045 (hbs1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tros03019
]
130572045 (hbs1l)
Messenger RNA biogenesis [BR:
tros03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
130572045 (hbs1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
DUF4045
DO-GTPase2
Motif
Other DBs
NCBI-GeneID:
130572045
NCBI-ProteinID:
XP_057219443
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Position
LG21:6169081..6190051
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AA seq
683 aa
AA seq
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MSRHRNVRGYNYDEDFDDDDMYGQSVEDDYCISPATAAQFIYSRQDSRHARQVEPLEEAE
FEVEDEMPTSPTITNTLDPLEQGRLYSCLDQMRAVLGDSVPDAMLTQAALKYDYDPQRAL
DFILAEENTNTDTPPDSTNQKPEPTTTPVPQKAKARDAPESRVETEVVPKVARMTVSGKK
QTMGFDVPSVEENGIAPLSVRRGPSPEVIAPPPATETPTKPACVSEDSATPTQPRSAGKS
KRQLDIRAELEKRQGGKPLLNLVVIGHVDAGKSTLMGHVLYLLGNVNKRTMHKYEQEAKK
AGKASFAYAWVLDETGEERDRGVTMDVGMTKFETNSKVVTLMDAPGHKDFIPNMITGAAQ
ADVAALVVDASRGEFEAGFEAGGQTREHGLLVRSLGVTQLAVAVNKMDQVNWQQERFQEI
VSKLGHFLKQAGFKDSDVFYIPTSGLSGENLTTKSKVPELTAWYTGPCLLEQIDAFKPPQ
RSVEKPFRLCVSDVFKDLGSGFCVTGKIEAGFVQTGDKMLAMPPNETCTVKGITLHDEAL
DWAAAGDHVSLTVTGIDIIKINIGCIFCDPKEPIKACTRFRARILLFNIEVPVTKGFPVL
LHYQTVGEPATIRKLVSILHKSSGEVLKKKPKCLSKGQNAVVEIQTQRPVALELYKDYKE
LGRFMLRYVGSTIAAGVVTEIKE
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgtcccgccacaggaatgtacgagggtataactacgacgaagattttgacgatgacgac
atgtacggacagtcggtggaggatgactactgcatttcacctgctactgctgcacagttt
atctactcgcgtcaagactcgagacatgcacggcaggtggaaccgctggaggaggcagag
tttgaggtagaggatgagatgccaacctctcccaccatcacaaacactcttgaccctcta
gaacaaggtcggttgtattcctgtttggatcaaatgagagcagtgctgggagactccgtt
ccagatgccatgttaacacaagcagctttgaagtacgactacgatcctcaaagagccctt
gacttcattctggccgaagagaataccaatacggacacccctccagacagcaccaaccag
aagccagagcctaccaccacaccagtaccacagaaagccaaagcacgggatgcaccagaa
agtcgagtcgaaaccgaggttgttccaaaggttgcacggatgactgtatcaggcaagaag
cagaccatgggctttgatgtgccaagtgtggaagaaaacggcattgctcccttatcagtc
cgaagagggccgagcccagaggtcatcgcccccccgccggccaccgagaccccaaccaaa
ccagcgtgtgtgtctgaagactcagccaccccaactcaaccccgctcagctggaaagagc
aaacggcaactggacatccgtgccgaactggagaagagacaaggagggaagccgttactc
aacctggtcgtcataggtcatgtagatgctggtaaaagcactctaatgggtcatgtgtta
tatctgctgggaaatgttaacaagagaaccatgcataaatacgagcaggaggccaagaaa
gctggcaaggcgtctttcgcttacgcgtgggtcctggatgagacgggagaggagagagac
agaggagtgaccatggatgtgggcatgacaaagtttgagacaaactctaaggttgttact
ctgatggatgcgcccggacacaaggacttcattccaaacatgatcacaggggctgcacag
gcggatgttgccgccttagtagtagatgccagccgtggggagtttgaggccgggtttgag
gcaggtgggcagacccgcgagcacggcctactggtccgatccctcggagtcacgcagctt
gccgtcgctgtcaacaagatggaccaggtgaattggcagcaggagaggttccaggaaatc
gtctctaagcttggtcactttctgaagcaagctggtttcaaggattctgatgtcttttac
atccctacgagtggcctttcaggagagaatctcaccaccaagagcaaagtaccagaactt
actgcctggtacactggaccatgcctgctagaacagatagatgcctttaaacctcctcag
aggtcagtggagaagccgttcagactctgtgtatctgacgtcttcaaagatctgggctct
gggttctgcgtgacggggaaaatcgaggctggattcgttcagactggagataaaatgctg
gccatgccacctaatgagacctgcactgttaaaggcataactctccacgatgaagcatta
gattgggcagctgccggtgatcatgtcagtctgactgtaactggcattgatatcatcaaa
ataaatattggatgtatattctgtgatccaaaagaaccaatcaaagcatgtacgagattc
cgagccagaattctcctatttaatatagaagttcctgttacaaaaggcttcccggttctg
ctgcattatcagacagttggtgaaccagctactataagaaagttagtgagtattttacac
aagagcagtggagaagttctcaagaagaaaccaaaatgtttaagcaaaggacaaaatgca
gtggtggagattcaaacacaaagacctgtggctctggagctttataaagattataaagaa
ctgggtagattcatgctcagatatgtgggttcaactatcgctgctggagttgtcactgag
atcaaagagtga
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