Treponema sp. OMZ 803: ABH09_01375
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Entry
ABH09_01375 CDS
T09263
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
trp
Treponema sp. OMZ 803
Pathway
trp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABH09_01375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trp03019
]
ABH09_01375
03009 Ribosome biogenesis [BR:
trp03009
]
ABH09_01375
Enzymes [BR:
trp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABH09_01375
Messenger RNA biogenesis [BR:
trp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABH09_01375
Ribosome biogenesis [BR:
trp03009
]
Prokaryotic type
rRNA helicases
ABH09_01375
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
CMS1
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
UTC53353
LinkDB
All DBs
Position
299570..301465
Genome browser
AA seq
631 aa
AA seq
DB search
MDISFRDLGLDESVLNAVAAKGFEEPTPIQVLAIPRLLNGDANVIAKARTGTGKTAAYGL
PLVQELREPREKPRALVLVPTRELALQVASEIESFKEGTYPRITTVYGGASIVEQLRNLK
RGCEIVVGTPGRVIDHLERGSLNLDSIDYFILDEADEMLNMGFIEDIETIFKKANPDSRV
LMFSATMPKQILKIATDFMGEYEIVEEEASEEPLPLTEQFFWMVREEDKSEALVRLIDTA
ENFYGLVFCQTKVDADAVAKELDERHYEAAALHGDIPQGQREKILSRFRAGKTRILVATD
VAARGIDIEGITHVVNYSIPYDGPTYTHRIGRTGRAGAKGTAVSFIRPNERRRIDYLRRH
ARGELQEGKIPSIEKVLAQKQERLFSDLRRKLDTVRAEHTVNKPFIELAQELLAENKASF
ATAEENAADGTDTAVANTANIDEAVAFGAETAVSGVKNISSVEVLAAVLQLHYGSVLSAS
HYRNIKVPRTEDKRGKFSGGNTIRLYIGLGRKDGTSKRSLAQFFSTLLSIPEHAVDRIEL
FDRFSLADLPADAAHEALRLSKKKTNMPHIHIDTKSDSVNEKSPHTAGYTKKSPSRKLRE
GNRREAFFRDKDTRKKHPVSAGSAAAYKKRK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atggatatatcttttagagatttgggactcgatgagtccgtgttgaatgcggtagcggca
aaaggatttgaagagccgacacccattcaagtgttggcaattccgcgcctcttaaacggc
gatgcgaacgttattgcaaaggcgagaacaggtaccggtaaaaccgccgcctacggattg
ccgcttgtacaggaattgagggaaccgcgggaaaaaccgcgtgcgttggtattggtgcct
actcgcgaacttgcgctgcaagtcgcttcggaaatagaatcgtttaaggaaggaacctat
ccccgtatcacgaccgtatacggtggcgcgtcgattgtcgaacaattacgaaacttaaag
cgcggatgcgaaattgtcgtaggaacccccggccgtgttatcgatcatttagagcgcggc
tcactgaatttggacagtatcgactattttattttagatgaagctgatgaaatgctgaac
atgggctttatcgaagatatcgaaacgatattcaaaaaggcgaatcccgattcgcgagta
ctgatgttttcggcgacgatgcccaagcagattttgaaaatcgctaccgactttatgggc
gaatatgaaattgtagaagaagaggcatcggaagaaccgctgccgcttaccgaacagttt
ttttggatggtgagggaagaagataaaagcgaggccttggtgcgtctgatcgacaccgcc
gaaaacttttacgggctggtcttttgccaaactaaggttgacgccgatgcggttgcgaaa
gagcttgacgaacggcattacgaagccgccgctttgcatggagacatcccgcagggacag
cgcgaaaaaatcttgagccgttttcgggcggggaaaacccgtattctcgttgcaaccgat
gtcgccgcccgcggtatcgatatcgaagggattacgcacgttgtcaactattctattccg
tatgacggtcccacgtacacgcaccgtatcggtagaaccggacgggcgggggcgaagggg
acggcggtaagctttatccgcccgaatgagcggcgcaggatcgactatttgcgccgccat
gcacgtggcgagctgcaggaaggaaaaattccttctatagaaaaagttctcgcacaaaaa
caggagcggctcttttccgatctgcggcggaagctggataccgtccgtgccgaacatacg
gtcaacaagccttttatcgaactcgcacaggaactcttagccgaaaacaaagcaagcttc
gccacagcagaagaaaacgccgccgatggtaccgatactgctgttgcaaatactgcaaac
attgatgaagccgttgctttcggcgctgagaccgcggtatccggcgtcaagaatattagc
agcgtcgaagtgcttgccgccgtgctacagttgcattacggttcggtactgtcggcatcc
cattacagaaatatcaaagtcccccgcaccgaagacaagcgcggaaaattctccggcggg
aataccatccggctctatatcggccttggtagaaaggacgggacaagcaagcggagcctc
gcacagtttttcagtaccttgctttccatccccgaacatgcggttgaccgtatcgaatta
ttcgaccgtttttcgctcgcagatttaccggccgatgccgctcacgaagcgctgaggctt
tcaaagaaaaaaaccaacatgccgcacatccacatcgacacaaaatcggatagcgtaaac
gaaaaaagcccgcatacagccggctatacaaaaaaaagcccttcacgaaaactgcgtgaa
gggaaccggcgcgaagcctttttccgcgacaaagacacgagaaagaaacatcccgttagc
gcaggctccgccgctgcctacaaaaagcggaaatag
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