Treponema sp. OMZ 803: ABH09_04070
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Entry
ABH09_04070 CDS
T09263
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
trp
Treponema sp. OMZ 803
Pathway
trp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABH09_04070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trp03019
]
ABH09_04070
03400 DNA repair and recombination proteins [BR:
trp03400
]
ABH09_04070
Enzymes [BR:
trp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ABH09_04070
Messenger RNA biogenesis [BR:
trp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABH09_04070
DNA repair and recombination proteins [BR:
trp03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
ABH09_04070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
UTC53838
LinkDB
All DBs
Position
complement(887583..889343)
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AA seq
586 aa
AA seq
DB search
MNIINNKTPDGEIPYLFEPEAALPDTESCPMIFESDNPEYSLEKTADAVSICAQTVFGIP
TLYPWQRLVIANILDAVHAAEAAEAATSSAGITASHTEPQYGQYATEPAGISTAPVGTAL
PQAEDCFLSGTGEPLSELYDEDGVLRGRQIVLLPTGAGKSLCFQVPALLLDKPTLIIYPL
LALMSDQMRRMCEGNLEPVLFRGGQSGQERAAQYARLEGTDGKPPAKLIIANPEILMQKE
VLNRIAKHGIAHLAIDEAHCVSEWGDSFRPAYQTLKQVIETLKPPAVTAFTATAGNDVLK
RIGEVLFDGRAHLVRGESDRTNIAYYVRQCRVKAPALLQEVMQRQRPMVIFCATRNGTEQ
TAAFLRYTLRDRAIRFYHAGLQRNEKDEVEQWFHQHDSAILVTTCAWGMGVDKKNVRTVI
HLNAPPTAEAYVQEAGRGGRDGSPAQAVLLWSPEDKARIVLLPEKQRKRAEILVNFAESG
RCRREVLLEALGEVRAVPLHVGDESIACSGCDICNGTALLYPQDEQELIKFVTANKRKFT
VPQLIRILHENLPFWRAGDISSLISQLIHEQKIRPANAFFWKGALT
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atgaatatcatcaacaacaaaacgcctgatggcgaaattccctacctttttgaaccggag
gcggcgctgcccgatacggaaagctgccccatgatttttgaatcggataatcccgaatac
agcttggaaaaaacagccgatgccgtttctatctgcgcacagaccgtattcgggattccg
acgttatacccatggcagcgactcgtaattgccaatatcctcgatgccgtacacgctgcc
gaagcggccgaagctgccacatcgtcggccggtattacggcgtcgcacaccgaaccgcaa
tatggacaatatgccacagagccggctggaatttctacagcgccggtcggaaccgcgcta
ccgcaagcagaggattgctttttgtccggtacgggggaacctttaagcgagctttatgac
gaggacggcgtgttgcggggcaggcagatcgtcttgttaccgaccggcgcgggaaaatcg
ctgtgttttcaggtaccggcgctgctgttggataaaccgacactcattatctatccgctt
ttagccttgatgagcgaccagatgcgccggatgtgtgaaggcaatcttgaaccggtgttg
ttccgcggcggccaaagcggacaggaacgagccgcgcagtatgcccgcctcgaaggtacg
gacggaaaacctcctgcaaaactcatcattgccaatcccgaaattctgatgcaaaaagaa
gtgttaaaccgtattgcaaagcacggcattgcccaccttgccatagacgaggcgcactgc
gtcagtgagtggggagacagctttcggccggcctatcaaacgctcaagcaggttatcgaa
acgctaaaacctcctgccgttaccgcttttaccgcaacagcaggcaacgatgtattaaag
cgtatcggcgaagttctctttgacggccgggcgcatctggtacgtggagaatcggatcgt
accaatattgcctattacgtacgacaatgccgtgtaaaggcgcctgccctcctgcaagag
gttatgcagcgacagcggccgatggttattttctgtgcgacccggaacggtacggaacaa
accgctgcgtttttacggtatacgctgcgggatcgggcaattcggttttatcatgcaggc
ttacaacggaatgaaaaggatgaggtggagcaatggtttcatcagcacgatagcgcgata
ctggtaacgacctgtgcgtggggcatgggcgtcgataaaaagaacgtacgtactgtgatc
cacctgaatgcgccgcccacggccgaagcttatgtacaggaagcaggaaggggtggacgg
gatggaagccccgcgcaagccgtgttgctgtggagccccgaagacaaagcgaggattgtg
ttgttgcccgaaaaacagcggaaacgggctgaaatactcgtcaattttgccgaaagcggc
cgttgccggcgcgaggttctgctcgaagcacttggagaagtgcgggccgttccgcttcat
gtaggggatgaaagtatcgcctgttccggttgcgatatctgtaacggaaccgcgttgctg
tatccgcaagacgagcaggagctgatcaaatttgtgacagccaataaacggaaattcacc
gttccgcaacttattcggatattgcatgaaaaccttccgttttggcgcgccggcgacatt
agcagtcttatttctcagcttatccatgaacagaaaattcgaccggctaatgcattcttc
tggaaaggggcacttacatag
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