Treponema sp. OMZ 803: ABH09_05500
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Entry
ABH09_05500 CDS
T09263
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
trp
Treponema sp. OMZ 803
Pathway
trp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABH09_05500 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trp03021
]
ABH09_05500 (rho)
03019 Messenger RNA biogenesis [BR:
trp03019
]
ABH09_05500 (rho)
Transcription machinery [BR:
trp03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
ABH09_05500 (rho)
Messenger RNA biogenesis [BR:
trp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
ABH09_05500 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
ATPase_2
OB_RNB
AAA
AAA_22
AAA_25
AAA_14
ResIII
S1CSD-TOTE-2
Spore_III_AA
AAA_16
Motif
Other DBs
NCBI-ProteinID:
UTC54097
LinkDB
All DBs
Position
1212166..1213803
Genome browser
AA seq
545 aa
AA seq
DB search
MTILKVRRSPFTADGAAPDFQEQPELNLEQQEAAGTASLESDGFAHRTDSNAEYSSAPDE
PPEKKLVVRPRMHRKSSFDGTAPEVEKKPRRQSSMRRTYNRTQDSTAVGADGNIGSEDNE
NKLKLVINDLTRMGMHALRDLAAQYGIPHEDMVAMKKQEIIFFILKNHTENGGIIFASGA
LEILPDGYGFLRSPQNSYLSGSDDIYISPSQIRLFNLKTGDTVYGQIRSPKEGERFFALL
RVESVNFEDVSIAQSRIPFDNLTPLYPRQKLNLETTSELYSTRIMDLFCPIGKGQRSLIV
APPRTGKTILMQQIANAITQNHPEVYLIVLLIDERPEEVTDMERTVHGEVISSTFDEQAT
RHVQVAEMVLEKAKRLVEHKKDVVILLDSITRLARAYNQTVPTSGKVLSGGVDSNALHKP
KRFFGAARNIEEGGSLTIIATALIETGSRMDEVIFEEFKGTGNMEINLDRRLSDRRIFPA
INIKKSGTRKEELLINEADLQRIWLLRKVINPMDDIEIMDLLLDKMKKSKNNEVFLKLMN
SGTMQ
NT seq
1638 nt
NT seq
+upstream
nt +downstream
nt
atgacaatcttaaaagtacgccgttcgccttttactgctgacggagccgctccggatttc
caagaacaacctgagttgaatctggaacaacaagaggccgcgggtactgcgtcccttgaa
tctgatgggtttgcacaccgaacagacagtaatgcagagtattcttctgcgcccgatgaa
ccgcctgaaaaaaaattagtagtacggccacgtatgcacagaaaatcatccttcgacgga
actgcgcctgaggtagagaagaaaccgcgccgccaatcttctatgcgaagaacctataat
cgaacgcaggattccaccgctgtcggtgcagatggaaatatcggttccgaagacaatgag
aataaactaaaattggttattaacgatttgacacgtatggggatgcatgccctgcgtgat
ttggcagcgcaatatggtataccacacgaagatatggttgcgatgaaaaagcaagaaatt
atcttttttattctgaaaaatcataccgaaaacggcggaattatttttgcctcaggcgct
ttggaaattctacccgatggttacggttttttgcgttcgccgcagaatagctatctgtcc
ggttccgatgatatttatatttcgccgagtcagatacggttgttcaatcttaaaacgggc
gataccgtatacgggcaaatccgttcacctaaagagggagagcgtttttttgctctgctg
cgggttgagtcggtaaactttgaggatgtttctattgctcaaagccgtattcccttcgat
aaccttaccccgctgtatccccgccaaaaactcaatctggaaacaaccagcgaactttat
tcaactcgtattatggatttgttttgtccgatcgggaaagggcaacgttctttgattgtt
gcgcctccacgtaccggtaagacaatattgatgcagcaaatcgcgaatgctataacgcag
aatcatcctgaggtatatcttatcgttttgttgattgatgaacggccggaagaagttacc
gatatggagcgaacggtgcacggcgaggttatctcctctactttcgatgaacaggcaacg
aggcatgtacaggttgcggaaatggtattggaaaaggcaaagcggttagtcgaacacaaa
aaagatgtggtgatcctacttgattccatcacacgtcttgcccgtgcgtataaccaaacg
gtaccgacttccggtaaggtgttatccggcggtgtcgactcgaatgcattgcataagccc
aagcgctttttcggtgctgcccgtaatatcgaagaaggcggaagtttgaccattatcgcg
acggctttgatagaaaccggcagccgtatggatgaggtcatctttgaagaattcaaggga
acgggtaatatggaaatcaacttagatcgtcgattatcagatcgccgtatattccctgcg
attaatattaagaagtcgggcacccgtaaagaagaacttttgattaacgaggctgatttg
caacggatttggctgttgcggaaggttatcaatccgatggatgacatcgaaattatggac
ttacttcttgacaaaatgaagaaaagtaagaataatgaagtgttcttgaaattgatgaat
tccggaaccatgcaataa
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