Treponema sp. OMZ 803: ABH09_09395
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Entry
ABH09_09395 CDS
T09263
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
trp
Treponema sp. OMZ 803
Pathway
trp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
trp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
ABH09_09395 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trp03021
]
ABH09_09395 (rpoC)
03400 DNA repair and recombination proteins [BR:
trp03400
]
ABH09_09395 (rpoC)
Enzymes [BR:
trp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
ABH09_09395 (rpoC)
Transcription machinery [BR:
trp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
ABH09_09395 (rpoC)
DNA repair and recombination proteins [BR:
trp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
ABH09_09395 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
RPOC_hybrid
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
UTC52555
LinkDB
All DBs
Position
complement(2065492..2069835)
Genome browser
AA seq
1447 aa
AA seq
DB search
MRDIQDFDNIMIKLASPEAIRAWSYGEVKKPETINYRTLRPEREGLFCERIFGTTKEWEC
YCGKFKSIRYKGVICDRCGVEVTHFKVRRERMGHIELAAPVSHIWYYRSVPSRMGLLLDL
PVAALRSVLYYEKYIVIEPGGTDLKKNQLLNEDEYRDAQERYGGAFTANMGAEAVKTLLS
NLNLDELAAQLRMKMIEKGAKSDKRLLKRIEIVEHFRTSNNKPEWMILDVIPVIPPDLRP
MVQLDGGRFATSDLNDLYRRVIHRNSRLTRLMSLKAPDIIIRNEKRMLQEAVDALFDNSK
RKRVIKGSSNRPLKSISDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELKLWQCGLPTK
MAMELFKPFIMKKLVQKEIVSNIKKAKIMVEQEAAPVFAILDEVISEHPVMLNRAPTLHR
LGIQAFEPVLVEGKAIKLHPLVCKPFNADFDGDQMAIHVPLTQAAQMECWTLMLSSRNLL
DPANGKTIVYPSQDMVLGLYYLTKQRSLKEGQHVRRYSSVAEVMMAAEAGSIGWQELIKI
KYRGEEVETTPGRLAFNEEMPEGVPFVNTALDDKQIRKLIETVYRTKGTWVTVQMLDKLK
SVGYYYATFFGATLSMDDIIIPAEKSAMLEKANSEVLSIYNQYRGGHITQEERYNRVVEV
WSKTNEELTTIMMDTLAKDQDGFNTIYMMATSGARGSRNQIRQLAGMRGLMAKPSGDIIE
LPIRSNFKEGLNVIEFFISTNGARKGLADTALKTADAGYLTRRLVDIAQDVVVNEEDCGT
INGIEYSAVKSGDEVIESLSERIVGKYTLERVEHPISHELLIDVNEYITDEIAAKIEEAG
VQTVKLRTVLTCESKHGVCVKCYGRNLARNKIVEIGEAVGIIAAQSIGQPGTQLTMRTFH
VGGTASSTTEENHITFKYPVIIKDILGTSIPLDDGNLLFTRRGTLLFEKVLKEYTLAAGD
SVAVETGVRILRDDVLYTAADGTVIKSPLNAFAYLKGSTLYLTAPEQKTEIRNGSTVVIK
KGDYVPATSIVATFDPYNEPILAEQDGFVRFEDIIPGSTLEEEVNDETGVVERHISELKS
DMTLQPRVFISDESGNALGFYYLPDGAQLMVEEDTQIKAGTVIAKLAKAAARTQDITGGL
PRVSELFEARRPKVPAVLAQVAGTVSFKGLLKGKRIVIVRDHYGKDYKHLVPMSKRLLVR
DGDTVEAGERLCDGNLDPHDILAILGENALQNYLMNEIRDVYRMQGVSINDKHIGVIVRQ
MLRKIEVVSVGDTRFIYGQQVDKYQFHAENKRVTAEGGQPAIARPMFQGITKAALNIDSF
ISAASFQETTKVLTNAAIAGKTDELRGLKENVIIGHLIPAGTGMPQYRSVKLFDKNMSDL
DEQVNEILERRRRELEEAAAAEAEAEMDEEDFDTDDDLGYDDTESVETSYDEEPREEPAG
DAGDFED
NT seq
4344 nt
NT seq
+upstream
nt +downstream
nt
atgagagatatacaagatttcgacaatattatgattaaattagcttcgcccgaagcgatc
cgcgcgtggtcgtacggcgaagtaaagaaacccgaaacaattaactaccgtaccctgcgt
cctgagcgggaagggcttttctgcgagcgtattttcggtactacaaaagaatgggaatgc
tattgcggtaagtttaaatcaatccgctacaagggcgttatctgcgaccgctgcggtgtc
gaggttactcattttaaagtacgccgcgagcgtatggggcatatcgaattggcagcacct
gtttctcatatctggtactatcggtcggtgccgagccgaatggggcttttgctggactta
ccggttgcggcgctccgttcggtgttgtattacgaaaagtacatcgttattgagccgggt
ggaacggatttaaagaaaaatcagctgttaaacgaagacgaatatcgcgatgctcaggaa
cggtacggcggagcctttaccgcaaatatgggagcggaagccgttaaaaccttattaagc
aacttaaatctggatgagctcgctgctcagctcagaatgaagatgatagaaaagggtgca
aaaagcgataagcggcttttaaagcgcatcgaaattgtcgagcattttagaacgtcaaac
aataagcccgaatggatgatccttgacgttattccggttattccgcccgatttgcgcccg
atggtacagttggacggcggacgctttgcaacctcggatttaaacgatttgtaccgccgc
gttattcatcggaacagccgtttaactcgcttgatgagcttaaaagcacccgatatcatt
atccgcaacgaaaagcggatgctgcaagaagcggtagatgctttgttcgataattcgaag
cggaagcgtgtcattaaaggttcgtcaaaccgcccgcttaaatccatctcggatatgctc
aaaggcaagcaagggcgcttccgccagaacctgctcggtaagcgcgttgactattcggga
cgttcggttatcgtcgtcgggcccgaattaaagctgtggcagtgcggcttgcccaccaag
atggcaatggagcttttcaagccgttcattatgaaaaagctcgtgcaaaaagaaatcgtt
tccaatatcaagaaagcaaagattatggttgagcaggaggccgctccggtttttgccatt
ctcgatgaggttatcagcgaacatcctgttatgctgaaccgtgcaccgaccttgcaccgg
ctcggtattcaggcctttgaaccggttcttgttgaagggaaggctattaagctgcacccg
ctcgtttgtaaacccttcaacgcggactttgacggtgaccagatggctattcacgtaccg
cttacacaggcggcgcagatggaatgttggacgctgatgctttcaagcagaaacttgctc
gaccctgcaaacggaaagacaatcgtatatccgtcacaggatatggttctcggtttgtac
tatttaaccaagcagcgttcattaaaggaaggtcagcatgttcgccggtattcttcagtt
gccgaggtgatgatggccgcagaggccggttccatcggttggcaggaactgataaagatt
aagtaccgcggtgaagaggttgaaacgacgcccggccgcctcgcctttaacgaagagatg
ccggaaggagttccgtttgtcaataccgctctggatgataagcaaatccgcaagctgatt
gaaaccgtgtaccgcacgaagggaacatgggttaccgtccagatgctcgataagctcaaa
tccgtcgggtattactatgcgactttcttcggcgcgacgttgagtatggacgatatcatt
atccctgcggaaaaatcggctatgcttgaaaaagcaaacagcgaagttctttctatatat
aatcagtatcgcggcggtcatattacgcaggaagagcggtataacagggttgttgaagtg
tggtcaaagacaaacgaagagttgaccacgataatgatggatacgctcgcaaaggatcag
gacggcttcaacacaatttatatgatggccacctccggtgctcgtggtagccgtaaccag
attcgtcagcttgccggtatgcgaggtcttatggctaagccgagcggcgatattatcgag
ttacccatccgttcgaacttcaaagaaggtttgaacgttatcgaattctttatttctacg
aacggcgcccgaaagggtcttgccgataccgcgttgaagactgctgatgccggttatcta
acacgtcgtcttgtcgatattgcacaggatgttgttgtcaatgaagaagattgcggcacc
atcaacggtattgaatactcggcggtaaaatccggagacgaggttattgaatctttgagc
gaacggattgtcggtaagtatacgctcgagcgggttgagcacccgatttcgcatgagctc
ttaattgatgtaaacgaatatatcaccgatgagattgctgcgaagatcgaagaagcaggc
gtccagaccgttaagctccgcacggtattaacctgcgagtccaaacacggcgtttgtgtc
aagtgctatggccgcaaccttgcccgcaataagattgtcgaaatcggcgaggcggtcggt
atcatcgccgcacagtccatcggtcagccgggtactcagctcacgatgcgtaccttccac
gtcggaggtacggcaagcagcacgaccgaagagaatcatatcacctttaaatatcccgtc
atcatcaaggatattttgggaacatccattccgctggatgacggcaatctcttgtttacc
cggcgcggtacgcttctgtttgagaaggtacttaaagagtatacgcttgcggcaggggat
tccgttgcggtggaaacgggtgttcgcattctgcgcgacgacgtgctgtataccgctgcg
gatggcacggttataaagagcccgctgaacgcttttgcttatttgaagggttcgacgttg
tatttgacggcgcccgaacagaagaccgaaatcagaaacggttctaccgttgttattaaa
aagggtgattacgtcccggctacctcgattgttgcaaccttcgatccgtataatgaaccg
attcttgcggaacaggacggatttgtccggtttgaggatattatccccggttcgaccctc
gaagaagaagtcaacgatgaaaccggcgtcgtggaacgccatatttccgaattaaaatcg
gatatgaccttacagccccgtgtatttatttctgatgaatccggtaatgcgctcggtttc
tattatctaccggacggcgctcagctgatggtcgaagaagatacgcagattaaggccggt
accgttatcgcaaaacttgcaaaagccgctgcgagaacgcaggatattaccggcggtctt
ccccgtgtttcggaactctttgaagctcgccgtcccaaagtgcctgcagtactggctcag
gtcgccggtaccgtttcgtttaaaggcttgctgaaaggtaagcgcatcgttattgtgcgc
gaccattacggcaaggattataagcacttggttccgatgtctaagcgactgcttgtccga
gacggcgacacggttgaagcgggtgagcggctatgcgacggtaaccttgatccgcatgat
attcttgcaatcttgggtgaaaatgcacttcagaattatctgatgaatgagatccgtgac
gtttaccgaatgcagggcgtttccatcaacgataagcacatcggcgttattgtccgccag
atgctccgtaagattgaggtggtttccgtcggcgatacccgctttatctacggtcagcag
gttgataagtatcagttccatgcggaaaataagcgcgttaccgcggaaggcggtcagccg
gctatcgctcgtccgatgttccaaggtattaccaaagcggcattgaatatcgactcattc
atctcggctgcttcgttccaggagacgacaaaggttttgacgaatgccgctattgccgga
aaaaccgacgaactacgcggcttaaaggaaaacgttattatcggacatcttattcccgcc
ggtaccggtatgccgcagtatcgttcggttaagctctttgataagaacatgagcgacttg
gacgagcaggtcaatgaaattctcgagcggcgcagacgcgagctggaagaagcggcagct
gccgaagccgaagcggagatggatgaagaagattttgatacggatgacgatctcggctat
gatgatacggagtccgtcgaaacttcttatgatgaagagcctcgtgaagaacctgcagga
gatgctggggattttgaggattga
DBGET
integrated database retrieval system
