Treponema sp. OMZ 803: ABH09_10485
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Entry
ABH09_10485 CDS
T09263
Name
(GenBank) DEAD/DEAH box helicase
KO
K03732
ATP-dependent RNA helicase RhlB [EC:
5.6.2.7
]
Organism
trp
Treponema sp. OMZ 803
Pathway
trp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
ABH09_10485
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trp03019
]
ABH09_10485
Enzymes [BR:
trp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
ABH09_10485
Messenger RNA biogenesis [BR:
trp03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
ABH09_10485
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Flavi_DEAD
WipA_Phos
Motif
Other DBs
NCBI-ProteinID:
UTC52754
LinkDB
All DBs
Position
complement(2321914..2323701)
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AA seq
595 aa
AA seq
DB search
MNFSNCNLDSTLLQGLEEAGYIECTPVQEQVFSAGMDGSDLYVQSQTGTGKTAAYLVTLM
QRMLAAGTEDRRPALILVPTRELAVQVEEEALKLGKHTGIRAASFYGGVGYQQQEEALKN
GVDLIIGTPGRVIDLEKSKTMKLKNVGFLVVDEADRMFDMGFYPDLRSLLSVLSKAEERQ
TMLFSATLNTWVKNLAWEYTIDAKEITIDADNVTVDEINQKLFHVAAEQKMSLLLGILRN
EKPENAIIFCNTKKTTEIVAKRLRINGYATEFLIGDLPQPKRLHIIDSFKAGKLSCLVAT
DVAARGIDINDLAMVINYDLPNEAENYVHRIGRTARAGKTGAAYSLCSEQDVYNLPDIEK
YIEAKIPVVIPGEEDFEKDRSADQYIRLDRDSFDEERSGGRFGRKPRLGEKSRREERDSR
RSVKTAKPASRLTDSKRKKKGTQGEDKTDKKSADSLGGLSFEERMAYYKNRYGKKLASQD
SAALADTNEGTESVKESRNAQPAADKKGKAGAPVNRAKNRQGQPEKKRRKGDKYVPSQTG
DTRQGSKQKRRPNQDRMPEQRSRTGKAPVQSSAQAQPVKQKTGIFGMLKKLFTGK
NT seq
1788 nt
NT seq
+upstream
nt +downstream
nt
atgaatttttctaattgtaatcttgattccactcttttacaggggcttgaagaagccggt
tatattgaatgtactccggttcaagagcaggtgttttccgcaggaatggacggttccgat
ctttatgtacaatctcaaacaggtacgggaaaaacagctgcgtatctggtaacactgatg
caacggatgcttgctgcaggaaccgaagaccgccgccccgctttgattcttgttcccacg
cgggaacttgccgtacaggtcgaagaagaagcgcttaaattaggtaaacatacggggatc
cgtgccgcgagcttttacggcggcgtcgggtatcagcagcaggaagaagcgcttaaaaac
ggagtagaccttatcatcggtacccccggtcgcgttatcgatcttgaaaaatcaaaaacc
atgaagctgaaaaatgtcggctttttagtcgttgatgaagcagaccgtatgttcgatatg
ggcttttatcctgatctgcgcagcctcctttcggtattgtccaaggcggaagaacggcaa
acgatgctgttcagcgcgaccttaaatacgtgggtaaaaaaccttgcatgggaatacact
atcgatgcaaaagagatcaccatcgatgcggataatgtgacggttgatgaaatcaatcag
aagctgttccacgtggctgcggaacaaaagatgtccctgctgctcggtatcttgcgtaac
gaaaaaccggagaatgccatcatcttctgcaacaccaaaaagacaacggagattgttgca
aagcggctgcgcattaacggctatgcgacggaattcctcatcggcgatttaccccaaccg
aagcggctgcatattatcgattcgtttaaggcgggtaaactcagctgtttggttgcaacc
gatgtcgcggcgcggggaatcgacatcaacgacctcgcaatggttatcaactacgacctt
ccgaatgaggcggagaactacgtacaccgaatcggtagaacggcgcgagcgggaaagacc
ggcgctgcgtacagtctctgctcggaacaggatgtgtacaaccttcccgatatcgaaaag
tatatagaagcaaagataccggttgttatccccggcgaagaagattttgaaaaagaccgc
agcgccgatcagtatatacggcttgaccgcgactcctttgacgaagaacgatccggcgga
cggttcggacgcaagccgcgcctcggcgaaaaatcgaggcgggaagagagagactcccgg
cgcagcgttaaaacagcgaaacctgcttcccggcttaccgattcaaagcgtaaaaagaaa
ggcacgcagggagaagacaaaaccgataaaaaatctgccgactcactcggcggtttgagc
tttgaagagcggatggcatattacaaaaaccggtacggaaaaaaacttgcctcacaggat
agcgccgcccttgcagataccaacgagggtacggaaagcgtcaaagaaagccgcaatgct
cagcccgctgccgacaagaaaggaaaggcgggagccccagtaaaccgcgctaaaaaccgg
cagggacagcctgagaaaaagcggcgcaaaggtgataaatatgttccgtctcaaacgggc
gatacacggcagggttcaaagcaaaagagacggccgaaccaagaccgaatgcctgaacag
cggagccgaaccggaaaggcgccggtacagtcttcggcacaagcccagccggtaaaacaa
aaaacaggtatattcggtatgctgaaaaaactgtttaccggaaagtaa
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