Thermotoga sp. RQ2: TRQ2_0962
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Entry
TRQ2_0962 CDS
T00706
Name
(GenBank) RNA binding metal dependent phosphohydrolase
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
trq
Thermotoga sp. RQ2
Pathway
trq03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trq00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TRQ2_0962
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trq03019
]
TRQ2_0962
Messenger RNA biogenesis [BR:
trq03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
TRQ2_0962
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
Lectin_N
KH_KhpA-B
TMP_3
Cas3_HD
Spore_YhcN_YlaJ
Motif
Other DBs
NCBI-ProteinID:
ACB09313
UniProt:
B1LAG5
LinkDB
All DBs
Position
995806..997329
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AA seq
507 aa
AA seq
DB search
MLWYIVAGAGGLLIGYLIANYQINQKLRKAKEDAQTIIEKAEKEANEIKKKAIIEGREEV
HRLREEFEKERSRREEELRALEERLLKREELLTRKEENLEKREQQVEELKANLEEKMREV
EEKEKRIDEELKRLAGMTVEEARELILEEARQRYEHDLAKLYKEMKEQVEEEAEKEAKKV
IAFAVQRYAPDYVGEITVSTVSLPSDDMKGRIIGREGRNIRTFEKITGVDLIIDDTPEVV
VLSCFNPLRREIARITLEKLVADGRIHPARIEEMYEKAKQEVEKAIKEAGQEATFKAGVM
GLHPELVKLLGKLKYRTSYGQNVLNHSIEVALLAGYMASELGLNADKARRGGLLHDIGKA
VDQELEGSHTTIGAELARRYGEKEDIINMILSHHGEEEPMTPEAVLVAAADALSAARPGA
RRESLENYIKRLMKLEEIAKSFKYVEKAYAIQAGREIRVIVEPDKVDDALAEKLAYDISK
KIEEELEYPGVLKVVVIREKRSVAYAK
NT seq
1524 nt
NT seq
+upstream
nt +downstream
nt
atgctgtggtacatagtagcaggagccggtggtcttctgattggatatttaatagcaaac
tatcagataaatcaaaagctcagaaaagcgaaagaagacgctcaaaccatcattgaaaag
gcggagaaagaagcaaacgagataaaaaagaaagcgataatagaaggaagagaggaagtt
cacaggctcagagaagaattcgaaaaagagcgatccagaagagaagaggaattgagagca
ttagaagaaagactcttgaaaagagaagagctcctgacaagaaaagaagagaaccttgag
aaaagggaacagcaggttgaagaactcaaagcaaatctggaagagaaaatgagagaggtc
gaagaaaaggaaaaaagaatcgacgaagaattgaaacgccttgccggtatgactgtagaa
gaggcaagagaactcatcctcgaagaagcaaggcagaggtacgaacacgaccttgcgaaa
ctctacaaagagatgaaagaacaggttgaagaagaagctgagaaggaagccaagaaagtc
atagcattcgctgttcagagatacgcaccggattatgtaggagaaatcaccgtttctacc
gtttctctaccgtcggatgacatgaagggaagaatcataggtagagaaggaagaaacatc
aggacatttgaaaagatcacgggtgtggacttgataatagacgacaccccggaagtggtg
gttctttcctgctttaaccctctgagaagagagatagcccgtatcactctggaaaaactg
gtggcggatggaagaatacatcctgcaaggatcgaagaaatgtacgaaaaagcaaagcag
gaagtggagaaagccataaaagaagctggacaggaggcgacgttcaaagcgggtgttatg
gggctccatccggagcttgtgaaactccttggaaaattgaaatacagaacgagctatggc
caaaacgttctgaaccattcgatagaagtggctctgctcgccggttacatggcttctgaa
cttgggctaaacgcggacaaagcgagaagaggaggactcctccacgatataggaaaagct
gttgatcaggagctggaaggttcacacacgaccataggtgcagagcttgcccgaagatac
ggagaaaaagaagacatcataaacatgattctcagccatcacggagaagaagaacccatg
acacctgaagcagtactcgtggcagctgctgatgctctctccgcggcaagaccaggtgcg
agaagagagagtctggagaactacatcaagcgtcttatgaagctggaggagatagcaaaa
agcttcaagtacgttgaaaaggcctacgccattcaggctggaagagaaattagagtgatt
gtggaacccgacaaagtggatgacgctctcgctgaaaaactcgcctacgatatttctaaa
aagatagaagaagagctcgagtatcctggtgttctgaaagttgtggtgataagagagaaa
agaagcgtcgcttacgcgaagtaa
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