Thermotoga sp. RQ2: TRQ2_1209
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Entry
TRQ2_1209 CDS
T00706
Name
(GenBank) single-stranded-DNA-specific exonuclease RecJ
KO
K07462
single-stranded-DNA-specific exonuclease [EC:3.1.-.-]
Organism
trq
Thermotoga sp. RQ2
Pathway
trq03410
Base excision repair
trq03430
Mismatch repair
trq03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
trq00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
TRQ2_1209
03430 Mismatch repair
TRQ2_1209
03440 Homologous recombination
TRQ2_1209
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trq03400
]
TRQ2_1209
DNA repair and recombination proteins [BR:
trq03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
RecJ
TRQ2_1209
DSBR (double strand breaks repair)
HR (homologous recombination)
RecFOR pathway proteins
TRQ2_1209
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TRQ2_1209
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DHH
RecJ_OB
DHHA1
Motif
Other DBs
NCBI-ProteinID:
ACB09553
LinkDB
All DBs
Position
complement(1241342..1244209)
Genome browser
AA seq
955 aa
AA seq
DB search
MKKWELSQPDEKAVSEISQYFGLNEIASRILVNRGFTTREAVEAFLFVNESHQHDPFLFN
DMEKAVETLLEARSKNELVLIHGDYDVDGITSTVMLKEFLEENGWRVDVYIPHRIEEGYG
IQPENISTFKENNVSCLVTVDCGITALDSVALAKKFGMKVIVTDHHEVNGDLPPADAIVN
PKVPGENYPFRDLAGVGVTYKLVQALSEATNYPHPERFLELVALGTVADMVTLLDENRYF
VKKGIELLANTKRVGLKRLLERLGLRNLTSHDISYKIAPRLNAAGRMGSANDAFNLLIMN
DPAKADGVVDRLMELNSIRRKTEWAIYKEAIEIIETNDLWKDPVIVVAKENWHVGVIGIV
AAKLANRYEKPVAVVSLDEKIAKGSIRSYNGYDIMNIFNEDILKIFEEIGGHSSAVGFSL
KRDQLEPFRDYIRNISLEEREEKVIVDAEVRMEDIDDRFIEDIKKLMPFGQGNPEPVLLF
KDVLVEKIHFFGEDGSNVFLHLKNGEKNLEVVGYNFKNLSSSLSTLPVTPTRGDVVVNLR
PMGNGVSYYLISLDVKPVFSVKNREVSHILSRSKEERTLIKVPYPSKTKLLLSIKEELRG
KLAIVSLTNATTQNILGCLSRYYTSRNLGFVNSTFSKEEESDIVLFTLAGFLKKHRLDEF
DVFVVNEFQDFLAHRDSELVKSFLDIVDKHPGKFIFVASMEHPGLEEFLKKEKYDVVELR
TGEPEEFLFSDQRNSFDLGSLVDAHSFAVVVSEKKLIPDLYRKIGKDAIVYYTSMDMEKK
IKAIGLMESGSARKAIITSNTDGLPTHIKGDIFFYDFPLSIYEIVDLLRRKSVVNLCYSS
SDIEKRRYELNKLFPDREKLKEIAITAMNLKDKEKLEKILESEYDLSSATLRKIYLDLLE
ESGFNFDRWSFSEDERIPWRLLERELEIAQFERTVSVLSKDLKWIFNFFKDTVVK
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atgaaaaagtgggaactttcacagcctgatgaaaaggctgtgtcagagatttctcagtat
tttggtctcaatgaaattgcatcgagaatactcgtaaacagaggcttcactaccagggaa
gcggtagaggcttttctgttcgtcaatgaatcccaccagcacgatcccttcctcttcaac
gatatggagaaagcggttgaaaccctgcttgaagcccgatccaagaacgaactcgttctg
atccacggagactacgatgtggatggtataacttcaaccgttatgttgaaggaattcctc
gaggagaacggctggcgtgttgatgtttatattccccaccgtatcgaagagggatacggt
atccagccagaaaacatctcgacctttaaagaaaacaacgtctcctgtcttgtaacggtt
gactgcggaataaccgcgctggattcggtcgctctcgcgaaaaaattcggaatgaaagtg
atcgtcacggaccaccacgaggtgaacggcgatcttccccccgccgatgccattgtgaac
ccaaaagtacctggagagaactacccattcagagatcttgcaggtgtcggtgtaacttac
aaactcgtccaggctctttctgaagcgaccaattatccccatcccgagagatttttggag
ctggtagctcttggaacggtcgccgatatggtcaccctcctcgacgaaaacagatacttc
gtgaaaaagggaatagagttacttgcgaacacaaaacgtgtaggtttaaagaggcttctg
gaaagactcggactgagaaatctcacatcgcacgatataagttacaaaatagctcctcgt
ctcaacgccgcgggccgtatggggagtgccaacgacgccttcaatttactgataatgaac
gatccagcgaaagcggacggtgttgtggatagattgatggagctgaacagtatcagaagg
aaaacagaatgggcgatatacaaagaagcaattgaaataatcgagacaaacgacctgtgg
aaagatcccgtcatagtcgttgcaaaagaaaactggcacgtgggagtcatcggcatagtc
gctgccaaactggcaaatcgttatgaaaaacccgttgcagtcgtctctctggacgaaaag
atagcgaaaggttccataaggagctacaacggttatgacataatgaacattttcaacgaa
gatattctcaaaatattcgaggagataggaggtcattcctcggcggttggcttctccttg
aaaagagaccaactggaaccgttcagggattacatcagaaacatttctctggaagaacga
gaagagaaggtaatcgttgatgctgaggtcagaatggaagatatcgatgatcgcttcatt
gaagacataaaaaaactcatgcccttcggccagggaaatccggaacctgttcttctcttc
aaagacgtcctggtagaaaagatccatttctttggagaagacggcagcaacgtgttcctt
cacctgaaaaacggtgaaaagaacctggaagttgtgggatacaatttcaagaacctttcg
agttctctttctacattaccagtaactcccaccagaggagacgttgtggtgaatctgcgc
cccatgggaaatggagtttcttactatctcatctcgttggatgtgaaacctgttttctct
gtaaaaaacagagaagtgagtcatatactgagtagatctaaggaagaaagaacactgata
aaggtaccttacccatcaaaaacaaagcttctgctttccataaaggaagagcttcgggga
aaactggcgatcgtttctttaacgaacgctacgactcaaaacattctggggtgcctttcg
aggtactacacctccagaaacttgggatttgtaaattccaccttttctaaggaagaagaa
agcgatattgttctcttcacccttgctggttttctgaaaaaacaccgtctggatgagttt
gatgtctttgtggtgaacgagttccaagattttctggcgcatcgcgacagcgaactggtc
aaaagcttcctagacatagtcgacaaacacccgggaaaattcatcttcgttgcctcgatg
gaacacccagggttggaagagtttctgaaaaaggaaaaatacgatgtcgttgagctgaga
accggcgaacctgaggaatttctgttctccgatcagagaaattctttcgacttaggttct
cttgtggacgctcacagtttcgcggtggttgtttctgagaaaaaactcataccagatctt
tatcggaagattggcaaagatgcaatcgtttactacacaagcatggacatggaaaagaaa
ataaaggcaatcggcttgatggaaagtggttctgctcgaaaagcgatcatcacaagcaac
accgatgggcttccgacccacataaaaggcgatatcttcttttacgacttcccgctcagc
atttacgaaatagtggatcttttgagaagaaaatcggtggttaacctctgctactcttcc
tccgacattgaaaagcgtcgatacgagctcaacaagctgtttccagatcgtgaaaaacta
aaagaaatagcgatcacagcgatgaatctgaaagacaaagaaaaactggagaagattttg
gagagcgagtacgatctgagcagcgccactctgagaaagatttacctggaccttctggaa
gaatccgggttcaacttcgatagatggagtttttcggaagatgaaaggataccttggaga
ttgcttgagagagagctcgaaatagcccagttcgaaaggacggtttccgttctttcaaag
gatctgaagtggatattcaactttttcaaggatacggtggtaaagtga
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