Trichoderma reesei RUT C-30: M419DRAFT_104158
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Entry
M419DRAFT_104158 CDS
T06031
Name
(GenBank) DEAD/DEAH box helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
trr
Trichoderma reesei RUT C-30
Pathway
trr03013
Nucleocytoplasmic transport
trr03015
mRNA surveillance pathway
trr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
M419DRAFT_104158
09122 Translation
03013 Nucleocytoplasmic transport
M419DRAFT_104158
03015 mRNA surveillance pathway
M419DRAFT_104158
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trr03019
]
M419DRAFT_104158
03041 Spliceosome [BR:
trr03041
]
M419DRAFT_104158
Enzymes [BR:
trr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
M419DRAFT_104158
Messenger RNA biogenesis [BR:
trr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
M419DRAFT_104158
Spliceosome [BR:
trr03041
]
Complex C
Other components
EJC/TREX
M419DRAFT_104158
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
M419DRAFT_104158
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DUF4844
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
ETR97838
JGI:
TrireRUTC30_1_104158
UniProt:
A0A024RXN3
LinkDB
All DBs
Position
Unknown
AA seq
433 aa
AA seq
DB search
MSHEEDLIDYSDEEIGANETAAASNGKKGETTAATNVDKKGSYVGIHSTGFRDFLLKPEL
LRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSV
VVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKNDVETLKNKDTCPHIIVGTPG
RLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPQQKQVMMFSATLSDA
IKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLNELLDDLQFNQVIIFV
KSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDIE
RINLAINYDLPGDANSYLHRVGRAGRFGTKGLAISFVSTEQDQEVLKEIEKRFEVALPEF
PKEGVDASTYMAS
NT seq
1302 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaggaagatctcatcgactactccgacgaggagattggcgccaacgagacc
gccgccgcctccaacggcaagaagggagagaccactgccgccaccaatgtcgacaagaag
ggcagctacgtgggcatccactccacgggattccgcgacttcttgctgaagcccgagctt
ctgcgcgctatcggcgactgcggtttcgagcatccttcggaggtccagcaaacctgcatc
ccccaagcccttctgggcggagacattatctgccaggccaagtctggtctgggaaagact
gccgtctttgtcctggccacgcttcagcaggtcgagcccgtcaatggcgaggtctccgtt
gtcgtcatgtgccacactcgtgagctggcctaccagattcgagacgagtacaaccgattc
agcaagtacatgcccgacatcaagacgggcgtcttctatggtggcacccccatcaagaac
gacgttgagactctcaagaacaaggacacttgccctcacatcattgtcggcactcctggc
cgcctcaaggccctcgtccgtgacaaggccctccgtcttggaagcgttcgcatcttcgtc
cttgacgagtgcgacaagatgctcgaccagcctgacatgcgtaccgacgtgcaggatgtg
ttccgcgctacccctcagcagaagcaggtcatgatgttctcggccaccctgtccgacgcc
atcaagcccatctgccgcaagttcatgcagaaccccacggagcactacgtcgatgaagac
accaagctcactctgcacggcctgcagcagtactacatcaagcttgaggagcgcgagaag
aacaggaagctgaacgagcttctcgacgatctccagttcaaccaggtcatcatcttcgtc
aagagcaccgttcgcgctaccgagctggacaagctcctccgcgagtgcaacttcccctcc
atcgccgtccactctggagtcagccaggaggagcgtattcgccgctacaaggagttcaag
gagttcaagaagcgcatctgcgttgccactgacgtgttcggtcgtggtatcgatatcgag
cgtatcaacttggccatcaactacgacttgcccggcgacgccaactcctacctccaccgt
gtcggccgtgctggtcgattcggtaccaagggcctggccatttcctttgtgagcaccgag
caggaccaggaggtccttaaggagattgagaagcgattcgaagtcgctcttcccgagttc
cccaaggagggtgttgatgccagcacttacatggcgtcttag
DBGET
integrated database retrieval system
