Trichoderma reesei RUT C-30: M419DRAFT_129918
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Entry
M419DRAFT_129918 CDS
T06031
Name
(GenBank) U3 small nucleolar RNA associated protein
KO
K11806
DDB1- and CUL4-associated factor 13
Organism
trr
Trichoderma reesei RUT C-30
Brite
KEGG Orthology (KO) [BR:
trr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
trr03009
]
M419DRAFT_129918
04121 Ubiquitin system [BR:
trr04121
]
M419DRAFT_129918
Ribosome biogenesis [BR:
trr03009
]
Eukaryotic type
90S particles
Other 90S particles
M419DRAFT_129918
Ubiquitin system [BR:
trr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
M419DRAFT_129918
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
WD40
WD40_Prp19
Sof1
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
WDR55
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
EIF3I
Beta-prop_RIG_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WD40_RFWD3
ANAPC4_WD40
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_IFT122_1st
Beta-prop_HPS5
Beta-prop_NUP159_NUP214
Beta-prop_WDR35_TULP_N
Cytochrom_D1
Beta-prop_DCAF12
Beta-prop_SPT8
B-prop_COPA_B_2nd
Motif
Other DBs
NCBI-ProteinID:
ETS02130
JGI:
TrireRUTC30_1_129918
UniProt:
A0A024S9T9
LinkDB
All DBs
Position
Unknown
AA seq
445 aa
AA seq
DB search
MKIKAISRSVSAIQPPGTDAVKQPRNLDSAVHPFERAREYKRALNAVKLERMHAAPFIAQ
LGRGHVDGVYSIAKDPNSLERFASGSGDGVVKVWDLATRDEVWQASAHENIVKGLEWTRD
RKLLTCAADRTVKLFDPYNPASGSAPISSWLGSGAFTSLSHHRSRNAFAASSSVISVYDL
ERHTAAPEVLRWPTSTDTITSVAFNHVETSVLASCSSDRGIVIYDLRTGTAVAKTVLTFA
CNRVAWSPMEAFNFAAASEDHNVYLFDMRKMDRARNVLKGHVAAVMDVEFSPTGEELVSA
SWDRTIRLWHRDRGHSRDMYHTKRMQRVLSAKWTPDAKYILSGSDDGNVRLWRANASQRQ
GVKSTRQRQALEYNDALVKRYGHMPEINRIRRHRHMPKVVKKAAEIKNEELKSIKRREEN
ERKHSSKQFQARKSEREKMVLAQEK
NT seq
1338 nt
NT seq
+upstream
nt +downstream
nt
atgaagatcaaggccatcagccggtccgtatcggccatccagccccccggcaccgacgcc
gtcaagcagccccgaaacctcgactcggccgtccacccctttgagcgcgcccgcgagtac
aagcgcgccctcaacgccgtcaagctcgagcgcatgcacgcggcgccctttatcgcgcag
ctcggccgcggccacgtcgacggcgtctactccatcgcaaaggaccccaactcgctggag
cgcttcgccagcggcagcggcgacggcgtcgtcaaggtctgggacctcgccacccgggac
gaagtctggcaggcgtcggcgcacgagaacattgtcaagggcctcgagtggacgcgggac
cgtaagctgctgacgtgcgccgccgaccgcaccgtcaagctcttcgacccgtacaaccca
gccagcggctcggcgcccatctcgtcatggctcggctcgggggccttcaccagcctgtcg
caccaccgctcgcgcaacgcctttgccgcctcgtcgagcgtaatctccgtctacgacctc
gagcggcacacggccgcgcccgaggtcctccgctggcccacgtccaccgacaccatcacg
agcgtcgctttcaaccacgtcgagacgtccgtcctcgcctcgtgctccagcgaccgcggc
atcgtcatctacgacctccgcacggggaccgccgtcgcaaagacggtcctcaccttcgcc
tgcaaccgcgtcgcctggtcgcccatggaggccttcaacttcgccgccgcctccgaggac
cacaacgtctacctcttcgacatgcgcaagatggaccgcgcccgcaacgtcctcaagggc
cacgtcgccgccgtcatggacgtcgagttctcccccaccggcgaggagctcgtctccgcc
tcctgggaccgcaccatccgcctctggcaccgcgaccgcggccactcccgcgacatgtac
cacaccaagcgcatgcagcgcgtcctctccgccaaatggacccccgacgcaaagtacatc
ctctccggctccgacgacggaaacgtccgcctctggcgcgcaaacgcctcccagcgccag
ggcgtcaagtccacccgccagcgccaggccctcgagtacaacgacgccctcgtcaagcgc
tacggccacatgcccgagatcaaccgcatccgccgccaccgccacatgccaaaggtcgtc
aagaaggccgccgagatcaagaacgaggagctcaagtccatcaagcgccgcgaggagaac
gagcgcaaacactcgagcaagcagttccaggcgcggaaaagcgagcgcgagaagatggtc
cttgctcaggaaaagtaa
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