Trichoderma reesei RUT C-30: M419DRAFT_141737
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Entry
M419DRAFT_141737 CDS
T06031
Name
(GenBank) RNB-domain-containing protein
KO
K12585
exosome complex exonuclease DIS3/RRP44 [EC:3.1.13.-]
Organism
trr
Trichoderma reesei RUT C-30
Pathway
trr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M419DRAFT_141737
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trr03019
]
M419DRAFT_141737
Messenger RNA biogenesis [BR:
trr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
M419DRAFT_141737
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNB
Rrp44_CSD1
Rrp44_S1
OB_Dis3
PIN_4
CSD2
OB_HELZ2
Dis3l2_C_term
Motif
Other DBs
NCBI-ProteinID:
ETS01291
JGI:
TrireRUTC30_1_141737
UniProt:
A0A024S9V9
LinkDB
All DBs
Position
Unknown
AA seq
985 aa
AA seq
DB search
MTSLKRPQGSDQLSQNISNKVYVRSTRSGKVQKIVREVYLRTDIPCSSNLCRACLSQAPR
NAVNQALPFVLSARPAGTKSYPQGHYLVPDTNALLNAMDLFEQSSSFYDVIILQTVLEEL
KNRSLPLYNRLVGLTKSEDKRFYVFFNEFRLETYVNREANETVNDRNDRAVRQAVKWYGE
HLALTKAARVPAVVMLSDDRENLRKAREQGLQASSLADYVSELEDGDRLLDMIAESQLQA
QGGFKPSTQPLYPEYYTSSRMMTGVKAGLLHQGIFNVSPYNYLEGSIKVPAFPKPLLILG
RENINRSIDGDVVVVELLPQDQWKSPSTKIIEEDTITKNENADTEERQDFISDKERKALQ
EEVKRTQKATGENQLQPTAKVVGVVKRNWRQYVGHIDPSTASKAPSQGRRLDSVFLIPMD
KKIPKIRLRTRQVSELLGKRLLVTVDSWDRDSRHPVGHLVRSLGELETKAAATEALLLEW
DVQYRPFPKTVLDCLPKEGHDWRVPESKEDPGWRDREDLRDLLICSIDPPGCQDIDDALH
ARLLPNGNYEVGVHIADVSHFVKPANAMDTEASIRGTTVYLVDKRIDMLPMLLGTDLCSL
KPYVERFAFTVIWELDENADIVNVRFTKSVIKSREAFSYEQAQLRIDDASQQDDLTKGMR
MLLMLSKKLKKKRMDAGALSLSSPEIKVHMESESSDPIDVKTKELLDTNSLVEEFMLFAN
VSVAAKIYEAFPQTAILRRHAAPPKTNFDELADQLRIKRGLELRTDSSKALADSLDKCVD
PKEPFFNTLVRIMATRCMMSAEYFCSGTQAYPEFRHYGLASEIYTHFTSPIRRYADLLAH
RQLAAAIGYEAVHPSVRSRGRLEAVCKNINVRHRNAQMAGRASIAYYVGQALKGKVAEEE
AFVMKIFSNGFVVLVPRFGIEGLIRLRDLAEPEPESEYDAETYTLTTKGERSVRVELFQK
VVVRVHDDKDERTGKRGVKMELVSA
NT seq
2958 nt
NT seq
+upstream
nt +downstream
nt
atgacgagcctcaagagacctcaggggtcggaccagctgtcccagaacatctccaacaag
gtctatgtccggtcgacgcgcagcggaaaggtgcagaagattgtccgggaggtctatctg
agaacggatattccatgctcatccaacctgtgcagggcctgcttgagccaggcaccccga
aatgcggtcaatcaagccttaccgtttgttctgtcggccagaccggctggaaccaagtcg
tatccgcagggtcactacttggttcccgataccaacgcgctgctcaacgccatggactta
ttcgagcagagctcgtcattctacgacgtcatcatcttgcagaccgtcctggaagagctt
aagaaccgctcactaccgctctacaaccgcctcgtcgggctgaccaagagcgaagacaag
cgattctatgtcttcttcaacgagttccggctggagacgtatgtcaaccgcgaagccaac
gagaccgtcaacgacaggaatgaccgtgccgtgaggcaggctgtcaagtggtacggagag
caccttgcgctgaccaaggccgcgcgggtcccggccgtggtcatgttgagcgacgacagg
gagaatctcagaaaagcccgggagcaaggcctgcaggcttcttcgctggcggactacgtt
agcgagctggaagacggcgataggctcttggacatgattgccgagtcacagcttcaggcg
cagggtggcttcaagccatctactcagcccctgtatccggagtactacacttcttcgaga
atgatgacgggggtcaaggcgggcctgctgcatcagggcatcttcaatgtgtctccgtat
aattatctcgagggttcgatcaaggtgcctgctttcccgaaacctttgcttattctgggt
cgcgagaacatcaaccggtctattgacggcgacgttgtcgttgtcgagctgctgccgcag
gatcaatggaagtcaccgtcgacaaagattatcgaagaagacaccatcacgaagaatgag
aatgcggacacagaggagcgccaagactttatctcggataaggagcggaaggcacttcag
gaggaggtgaaaaggacacaaaaggccacaggagagaaccaactgcagccgacagccaag
gttgtgggcgtggtgaagcgtaactggcgacagtacgttggccacatcgacccgtcaacg
gccagcaaggctccgtcacaaggccggagactagacagcgtcttcctcatcccgatggac
aagaagatccccaagatccgtcttcgtacccgccaagtgtctgagttgttgggcaagaga
ctcttggttacagttgattcttgggatagagattcaagacatcccgtggggcatctggtt
cgctccctgggagagctcgagaccaaggcggcggcgaccgaagcgttgctcttggagtgg
gacgtccagtaccggccttttcccaagacggtgctcgattgccttccaaaggagggccac
gactggagagtgccagagagcaaagaggatcctggctggagagaccgagaagaccttcgg
gatctcctcatctgcagtatcgaccccccggggtgtcaagacatcgacgatgctcttcat
gccaggctgctaccgaatggcaactacgaggtcggtgttcacattgcggacgtatcacac
tttgtcaagcccgccaacgcaatggacacggaggcgagcattcgtggtaccaccgtttac
ctggtcgacaagcgcatagacatgcttccgatgctgctcgggacggatctctgctctctc
aagccctacgtcgagcgcttcgcattcacagtcatctgggagcttgacgagaacgccgac
attgtcaacgtgcgcttcacaaagtcggtgatcaagtcccgcgaggcattcagctacgaa
caagcacagctccgcatcgacgacgcgtcgcagcaggatgacctcacaaagggcatgcga
atgctgctcatgctctcaaagaagctcaagaagaagcgtatggacgccggtgccctgagc
ctgtcatcccccgagatcaaggtgcacatggaatccgagtcctcggaccccatcgacgtc
aagacgaaggagcttctcgacaccaactcgctcgtcgaagagttcatgctgttcgccaac
gtcagcgtcgccgccaagatctacgaggcgttcccccagacggccatcctgcgtcgccac
gccgctcctcccaagaccaactttgacgagctggccgaccagctgcgcatcaagcgcggc
ctggagctgcgcaccgactcgagcaaggcgctggccgactccctggacaagtgcgtcgac
cccaaggagcccttcttcaacacgctggtgcgcatcatggccacgcgctgcatgatgagc
gcagagtacttctgctccgggacccaggcgtatcccgagttccgccactacggcctcgcc
tcggagatttacacgcacttcacctcccccatccgtcgctacgcggaccttctcgcccac
aggcagctcgccgccgccatcggctacgaggccgtgcacccttccgtccgcagccggggc
cgcctggaggccgtctgcaagaacatcaacgtgcgccaccgcaacgcgcagatggccggc
cgggcgagcatcgcgtactacgtcgggcaggccctcaagggtaaggtcgccgaggaggag
gcctttgtgatgaagatcttcagcaacggcttcgtcgtgctggtgccgcggttcggcatc
gaggggctgattcgcctgcgcgacttggccgagcccgagccggagagcgagtacgacgcg
gagacgtatacgcttacgacaaagggcgagaggagcgtcagggtggagctcttccagaag
gttgtcgtgagggtgcatgatgataaggatgagaggacggggaagaggggtgtcaagatg
gagttggtgagtgcgtaa
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