KEGG   Trichoderma reesei RUT C-30: M419DRAFT_87450
Entry
M419DRAFT_87450   CDS       T06031                                 
Name
(GenBank) transcription factor Tfb4
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
trr  Trichoderma reesei RUT C-30
Pathway
trr03022  Basal transcription factors
trr03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:trr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    M419DRAFT_87450
  09124 Replication and repair
   03420 Nucleotide excision repair
    M419DRAFT_87450
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:trr03021]
    M419DRAFT_87450
   03400 DNA repair and recombination proteins [BR:trr03400]
    M419DRAFT_87450
Transcription machinery [BR:trr03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     M419DRAFT_87450
DNA repair and recombination proteins [BR:trr03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     M419DRAFT_87450
SSDB
Motif
Pfam: Tfb4 Rogdi_lz TackOD1 Ssl1
Other DBs
NCBI-ProteinID: ETR98934
JGI: TrireRUTC30_1_87450
UniProt: A0A024S0Q7
LinkDB
Position
Unknown
AA seq 362 aa
MDAVDVSEHYEVTAADNSPSLLSIVLDTNPRAWAALDSSLSLAQAISNILVFVNAHLAFS
NANQVAVIAAHVNRAVWLYPALQHPSSTTVKDNSGDVQMHDASAETSLPPPSANKYPQFA
QIESSVFSSIQTLMAETTVQDLDQLTTQLSGALTLALCRINKAAQALSSSDTTLSNAAPV
NATAPPPVKGRIVVVSVSDSDPSQYIPTMNAVFAAAHNQVAIDTISLAGDSTFLQQACFN
TNGIFLKAANPRGLLTYLMFGLIPDTEARASLITPTHDTVDFRTACFCHGKVVDTGYVCS
VCLSIFCTPPDNAECLTCGTVLALGNYGAKPAVLPRKKKKKKKIANGSGREETGSATGTP
RP
NT seq 1089 nt   +upstreamnt  +downstreamnt
atggacgccgtcgacgtctcggagcactacgaggtcaccgcggccgacaactccccctcc
ctcctctccatcgtcctcgacaccaacccgcgcgcctgggccgccctcgactcctccctc
tccctcgcccaggcaatctccaacatcctcgtcttcgtcaacgcccacctcgccttcagc
aacgccaaccaggtcgccgtcatcgccgcgcacgtcaatcgcgccgtctggctctatccc
gccctccagcatccctcctccacgaccgtcaaggacaactcgggcgatgtgcagatgcac
gacgcctcggcagagacaagtctcccgccgccatcagcaaacaagtacccccagttcgcg
cagatcgaatcctccgtcttctcctccatccagaccctcatggccgagaccaccgtccag
gacctcgaccagttgacgacacagctctcgggcgccctgaccctcgccctctgccgcatc
aacaaggccgcccaggccctcagctcatccgacaccacgctctccaacgcagcccccgtc
aacgccaccgccccgcctcccgtcaagggccgcatcgtcgtcgtctccgtctccgactcc
gacccgtcccagtacatccccaccatgaacgccgtcttcgccgcggcgcacaaccaggtc
gccattgacaccatttctctcgccggcgactcgacctttctccagcaggcatgcttcaac
acaaacggcatcttcctcaaggctgccaacccgaggggcctgctgacctacctcatgttc
ggcctgattcccgacacggaagcgcgcgcgtccctcatcacgccgacccacgacacagtc
gactttcgaactgcctgcttctgccacggcaaggtcgtcgataccggctacgtctgctct
gtctgcctcagcatcttctgcacaccgcccgacaacgctgaatgcctcacctgtggcaca
gttcttgcgctgggcaactacggcgctaagcccgccgtcttgcctcggaaaaagaagaag
aagaagaagattgccaacggcagcgggcgagaggagacgggcagcgcgacggggacgcca
aggccgtga

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