Trichoderma reesei RUT C-30: M419DRAFT_9389
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Entry
M419DRAFT_9389 CDS
T06031
Name
(GenBank) putative ATP dependent RNA helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
trr
Trichoderma reesei RUT C-30
Pathway
trr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
trr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
M419DRAFT_9389
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
trr03041
]
M419DRAFT_9389
Enzymes [BR:
trr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M419DRAFT_9389
Spliceosome [BR:
trr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
M419DRAFT_9389
Complex C
U5 SnRNP specific factors
M419DRAFT_9389
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
BRR2_plug
Helicase_C
AAA_22
PhoH
nSTAND3
Cas9_a
Motif
Other DBs
NCBI-ProteinID:
ETS01262
JGI:
TrireRUTC30_1_9389
UniProt:
A0A024SAN7
LinkDB
All DBs
Position
Unknown
AA seq
2199 aa
AA seq
DB search
MSDPHRDVSQYKYSAMSNLVLQADRRFVTRRTDEATGDPESLAGRLSINDMGSRVARDEA
PKPKKQSGMPDIERGSLQEGQDVLLREQRKRRPDAPQTGVLGTNDTLIEGITYRPRTAAT
RATFDLILTLVANSLGDVPYDVVRSAADAVLEYLKDDDMKDLDKKKEIDEILGTTLSPKQ
FNELVNLGKKITDYDAQDDDEDVNMGDNNDDDAEIDERQGVAVAFDEDDEEDDIVNEVRD
ESSEDEDEAEEEEGAAKADDDAIDAEEEMILDAAPSEDKQKKSDKTTIPARDVDAFWLQR
QIGMLYPDAHEQADKTKEALRILSGEPDEVGGEEKSLREIENDLMELFDFEHHELVQKLV
ENREKVFWLTKLARAPDAEQRANVEREMASEGLQWILNELRGKTGPDGDKAGKGTIKMDI
DVPASFTAEGPKAERPEGQLVGGLQPKKLINLENLVFDQGNHLMTNPKVRLPEGSTKRSF
KGYEEIHVPAPKKRSDPDDVLIPITDMPEWSRLPFSTAKSLNKIQSKCFPAAFEDDGNML
VCAPTGSGKTNVAMLTILREIGKNRNPETGDIDLDAFKIVYIAPLKALVQEQVGNFGKRL
EPYGIRVSELTGDRQLTKQQIAETQIIVTTPEKWDVITRKANDLSYTNLVRLIIIDEIHL
LHDDRGPVLESIVARTIRKTEQTGEPVRIVGLSATLPNYRDVASFLRVDTKKAMFHFDGS
FRPCPLRQEFIGVTERKAIKQLKTMNDVTYNKVIEHVGTHRNQMIIFVHSRKETAKTARY
IRDKALELDTINQILRHDAGSREVLAEAASQATDADLKDILPYGFGIHHAGMNRIDRTDV
EDLFARGAIQVLVSTATLAWGVNLPAHTVIIKGTQIYSPEKGSWVELSPQDVLQMLGRAG
RPQFDTYGEGIIITTQSEIQYYLSLLNQQLPIESQFVSKLVDNLNAEIVLGNVRTRDEGV
EWLGYTYLFVRMLRSPGLYQVGPEYEDDEALEQKRVDLIHSAAMVLRKSNLVKYDEKTGR
MQSTELGRIASHYYITASSMDTYNNLIQPSITTIELFRVFALSAEFKYIPVRQDEKLELA
KLMGRVPIPVKESIEEPHAKINVLLQAYISRLKLEGLALMADMVYVTQSAGRILRAIFEI
TLKKGWASVAKTALDLCKMAEKRMWPTMSPLRQFPSCPRDIVQKAERIEVSWSSYFDLDP
PRMGELLGMPKAGRTVCGLVAKFPRLDVQAQVQPMTRSMLRVELSITPNFEWDDSIHGAA
ESFWIIVEDCDGEDILYHDTFLLRKDYAEAEANEHIVDFTVPITDPMPPNYFVSVISDRW
MHSETRLAVPFHKLILPEKFPPHTELLDLQPLLVSALKVQDYINLYPEWRQFNKVQTQTF
NSLYKTDQNVFIGAPTGSGKTVCAEFALLRHWSQGEAGRAVYIAPFQELVDARLQDWQKR
LGHLGGGKQIVKLTGETAADLKILEAGDLILATPTQWDVLSRQWKRRKNVQTVQLFIADE
IHLLGGSMGYIYEIIVSRMHYIRTQTELPMRIVALSVSLANARDIGEWIDAKKHDIYNFS
PHVRPVPLELHIQSYSIPHFPSLMLAMAKPAYLAITQMSPDKPAMIFVPSRKQTRSTARD
LLVACAADDDDDRFLHADVEQMRPLLDRVHEEALAEALSHGIGYYHEALSQSDKRIVKHL
YDNGAIQVLIASRDVCWELTNTAHLVIVMGTQYFEGREHRYVDYPLSEILQMFGKALRPS
KDGRGRGVLMLPQVKREYYKKFLNEALPIESHLHNYLHDAFVTEISTKMIESGDDAINWT
TFTYFYRRLLGNPSYYGLTSTTHEGLSNFMSDLVETTLRELAESKIIEFDEDDGSVAPQN
AAMIGAYYNISYITMQTFLLSLTARTKLKGILEIVTSATEFETIQVRRHEDSLLRRIYDR
VPVKMAQPSYDSPHFKAFVLLQAHFSRMQLPIDLAKDQEVLLCRILSLLSAMVDILSSDG
HLNAMNAMEMSQMVVQAMWDRDSPLKQIPHFSPEVVKVANDFGIKDIFDFMEAMNPDENP
DYNKLVKQLGLSQKQLAQAAEFTNDKYPDLELEHEVLDADEIRAGEPAHLNIKITRNIEE
DDEHDPTVHAPFYPAKKIENWWLVVGDDKTRNLLAIKRVTIGRELSVRLEYTVPSPGEHN
LKLFLMSDSYVGVDQEREFSVTAAESMDVDEDDEDEDEE
NT seq
6600 nt
NT seq
+upstream
nt +downstream
nt
atgtccgacccccatcgcgatgtctcccagtacaagtactcggccatgtccaacctggtc
ctccaggcggaccgtcggtttgtcacacgtcgaacggacgaggccacgggcgacccagag
tctcttgctgggcgcctgagcatcaacgacatgggctctcgagtcgctcgcgatgaagca
ccgaagccgaagaagcaatcggggatgcccgacatcgagcgcgggagccttcaagaaggc
caggacgtcttgctgagagagcagcgaaagcgaagacccgatgcgccgcaaactggtgtc
ctgggcacgaatgacaccttgatcgaaggcatcacatatcgacctcgaactgctgcgaca
cgggcgacctttgacctgatcctgacacttgtggcgaacagccttggcgacgtcccgtac
gatgtcgttcgcagtgctgcagatgccgtgctggaatatctgaaggacgatgacatgaag
gacttggataagaagaaggaaattgatgagattctcggcacaactctgagccccaagcag
ttcaacgaactggtcaacttggggaagaagatcacagattacgacgcccaagacgatgat
gaggatgtcaacatgggagataacaacgatgatgacgccgaaatcgacgagcggcagggt
gtggctgttgcctttgacgaggacgacgaagaggacgacatcgtcaatgaagttcgggat
gagtcttccgaggacgaagacgaagcggaggaagaagaaggggcggccaaggcagatgat
gatgccatcgatgccgaggaggaaatgatcctcgatgcagcaccttctgaagacaagcag
aagaagagcgacaagaccacaatacctgcgcgagatgtggatgctttctggctacagcga
cagattggcatgttatacccggatgcgcacgagcaagcagacaagacaaaggaggcgctg
cgcatattgtctggagaacctgacgaggtcggcggcgaagagaagtcactccgtgagatt
gaaaacgatctgatggagctcttcgacttcgagcatcacgagctcgtccagaagctggtc
gagaacagggaaaaggtgttttggcttacgaagcttgccagagcaccagacgcggagcag
cgtgccaatgtcgaaagggaaatggcctcggagggtctgcagtggattctcaacgaactg
cgcggcaagacagggcccgacggggacaaggcaggaaaggggactatcaaaatggatatc
gatgtacccgcctcctttaccgcagaaggccccaaggcggaacgccctgaaggccaactg
gtgggtggtctgcagccgaagaagctcatcaacctggagaacctcgtcttcgaccaagga
aatcacttgatgaccaaccccaaggtcagattgccagagggatcgacgaagagatctttc
aagggctacgaagagatccacgtgcccgctccgaagaaacgcagcgatccagacgatgtc
ctcatccccatcacagacatgccggagtggtcacggctgccctttagcacggccaagtcc
ctaaacaagatacagtccaaatgctttccagcggctttcgaggacgatggcaacatgctt
gtttgtgcccccactggtagtgggaaaacaaacgtggcgatgttgactatcctaagagaa
attggcaagaaccggaaccctgaaactggtgacatcgatcttgatgctttcaagatagtc
tacattgcccctctcaaggccctcgttcaggagcaagttggaaactttggaaaacgcctc
gagccttacggaatccgcgtgtctgagttgactggtgatcgccaactcactaagcaacag
attgcagaaacccaaatcatcgtgactacgcctgaaaaatgggacgtcatcacgcgcaag
gccaacgatctgtcctacaccaacctggtgcgcttgatcatcattgacgaaatccatctg
ctccacgacgaccgtggtcccgttctggagagtatcgtcgccagaaccattcgcaaaacc
gaacaaacgggagagccagtgcgaatcgtcggtctgtctgcaacccttccaaactaccga
gatgtcgccagcttcctccgcgtcgacaccaagaaggccatgttccactttgacggttcc
ttcagaccgtgtcccctccgacaagagttcatcggcgtcacagaacgcaaggcaatcaag
cagctcaagacgatgaacgatgtcacgtacaacaaggtcattgagcacgtcggcactcac
cggaatcagatgatcatctttgtccactctcgtaaagaaaccgcaaagacggctcggtat
atccgagacaaggctttggaactggacacaatcaaccagattctgcgccacgatgctggt
agccgagaggtcttggctgaagctgcaagccaggccaccgatgcggatctcaaggacatc
ctgccctatggtttcggaatccatcacgccggtatgaaccgaatcgacagaaccgacgtt
gaggatttgttcgccagaggcgccattcaggttctcgtgtccactgccacgcttgcctgg
ggtgtcaacttgcctgctcacaccgtcatcatcaagggtacacagatctactctcccgaa
aagggtagctgggttgagctgagtcctcaagatgttctccagatgctgggccgtgcaggt
cgaccacaattcgacacttatggcgagggcatcatcatcacaacgcagagcgagatacag
tactacctttcgcttctgaaccagcaacttcccattgagagtcagtttgtgagcaaattg
gtagataacctcaatgccgaaattgtacttggcaacgtcaggactcgagatgaaggcgtc
gagtggcttggatacacatatctctttgttcgaatgcttcggtctcctggactgtaccaa
gttggtccggaatatgaggacgacgaggcgctagaacagaagcgtgtcgatctgatacat
tctgcagcaatggtcttgaggaagtctaaccttgtcaaatatgatgagaagacgggcagg
atgcagtctacagaattgggccgcattgcttcgcactactacattaccgccagctccatg
gacacctacaacaacctcatccagccatccattaccaccattgagctcttccgcgtcttc
gctctcagcgcagaattcaaatacattcctgtccgtcaagacgagaagctggagcttgct
aagctgatgggcagagtgccgatccccgtcaaggaaagcatcgaagaaccacacgcaaag
atcaatgttctgcttcaggcctatatctcgcgcttgaagctggagggcctggctctcatg
gcagacatggtctatgtcacgcagagtgccggccgaatcctgcgcgccatctttgagatt
acgctcaagaagggctgggcgtccgttgcgaagactgccttggatttgtgcaagatggct
gagaagcggatgtggcccaccatgtcgccgctgcgccagttcccctcctgcccgcgtgac
attgttcagaaagcggaaagaatcgaggtctcatggagcagctacttcgatcttgatcct
cccaggatgggcgagctgctgggcatgcccaaggcaggccgcaccgtctgtggactggtt
gccaaattccccagactcgacgttcaggcgcaagtccagcccatgaccaggtccatgctg
cgagtcgagcttagcatcacgccaaacttcgagtgggatgatagcatccatggcgcggcc
gagagcttctggatcattgtcgaggactgtgatggcgaggacattctgtatcatgacacg
ttcctccttcgcaaggactatgcggaggccgaagcaaacgaacacattgtcgactttacc
gtcccgatcactgatcctatgccacccaactacttcgtctcagtcatctccgacaggtgg
atgcattcggagacgaggttggccgttcccttccacaagctcatcttgccggaaaagttc
ccccctcacactgagctgctcgatcttcaacctctcctcgtgtcagcgctcaaagtccag
gactacattaacctgtatccggaatggaggcagttcaacaaagttcaaacacaaaccttc
aactcgctgtacaagactgatcagaatgtctttatcggcgctccaacgggaagcggcaag
acggtatgtgccgagtttgctctcttgcgacactggtcgcagggcgaggctggtcgagca
gtctacatcgctcctttccaggagcttgtcgacgctcgtctccaagactggcaaaagagg
ctgggccacttgggcggtggaaaacagattgtgaagttgacgggcgaaaccgccgcagat
ctcaagatcctggaagccggcgacttgatcctcgctacaccgacgcagtgggatgttttg
tccaggcagtggaagcgacgaaagaatgtccagacggtacagctcttcatcgccgatgag
atccatctcctgggcggttctatgggctacatctacgagatcatcgtctcgcgtatgcac
tacatccgtacccagaccgagctgcccatgagaattgttgctctgagtgtctctctggcc
aatgcacgggatattggcgagtggattgacgccaagaagcacgacatttacaacttcagc
cctcacgtcagacccgtccccctcgagcttcacatccaatcctactcaatcccccatttc
ccatccctgatgctggccatggcaaagcccgcatatctggccatcacccagatgtcgcca
gacaagccggcgatgatcttcgtgcccagtcgaaaacagacgagaagcactgcgcgcgac
ttgctggtggcctgtgctgcggatgatgacgacgaccgcttcctgcacgctgatgttgag
caaatgcgacccctcctcgatcgcgttcacgaagaggccctggctgaagccctatctcat
ggtatcggctactaccacgaagctctaagtcagagtgacaagcgtatcgtcaagcatctt
tacgataacggcgccattcaggttcttatcgcgtctcgagacgtctgctgggaactgaca
aacactgctcatctcgttatcgtcatggggacacagtactttgagggccgtgaacacaga
tatgtggactaccccctgagcgaaatcctacagatgtttggcaaggcattgcgaccatca
aaggacggccgcggccgtggagtgctcatgttgccccaggtaaagcgtgagtattacaag
aagttcctgaacgaggccctacccatcgagtcgcacttgcacaactacctccacgatgcc
ttcgtcacggagattagcaccaagatgatcgagtccggcgacgatgccatcaactggacc
acgttcacatacttctatcgaagactgctcggtaacccaagctactacggcttgaccagc
acaactcacgaaggccttagcaacttcatgtcagacctggtggaaacgacgctgcgtgaa
ctggccgagtccaagattatcgaattcgatgaggacgatggatctgtggcgccacagaat
gcagccatgatcggagcctactacaacatctcctacatcacgatgcagaccttcttactc
tcactcacggcacggacaaagctcaagggcatcttggaaatcgtcacatcagccaccgag
tttgagacgatccaggtccgtcgacacgaggacagtcttttgcgacgcatctacgatcgc
gtgcccgtcaagatggcacagcccagctacgactcgcctcacttcaaggcctttgttctg
ctccaggcgcatttctctcggatgcaacttcccatcgatctcgccaaagaccaagaagtc
cttctctgcagaattctcagtctcctcagcgccatggtcgacattctttcatcggatggc
catctcaacgccatgaatgccatggaaatgtcgcagatggttgtccaagccatgtgggat
cgcgacagccctctcaagcagattccgcacttttcgccagaggttgtcaaggttgcaaat
gactttggaatcaaggacatcttcgacttcatggaagcgatgaaccccgatgagaacccg
gactacaacaagctggtcaagcaactgggtctttcgcagaagcaactggcacaggcagca
gagtttacaaacgacaagtatcccgacttggagcttgagcacgaggttctcgatgcagac
gagatcagggccggcgagccggctcacctgaacatcaaaatcacgcgtaacattgaagag
gacgacgagcacgaccctacggtgcacgcgcctttctacccggcgaagaagattgagaat
tggtggttagtggtgggcgacgataagacccggaaccttctggcaatcaagagggtcacg
attggccgcgaattaagcgtccggcttgaatacactgtgccatctcctggtgagcacaat
ctcaagctgttcctaatgagcgatagttacgtcggcgtggaccaggagcgggagttttcg
gtgacggcagcagagagcatggacgtggacgaggacgacgaggacgaagacgaggagtag
DBGET
integrated database retrieval system
