Terriglobus roseus: Terro_0208
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Entry
Terro_0208 CDS
T02140
Name
(GenBank) VacB/RNase II-like 3'-5' exoribonuclease
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
trs
Terriglobus roseus
Pathway
trs03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trs00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Terro_0208
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trs03019
]
Terro_0208
03016 Transfer RNA biogenesis [BR:
trs03016
]
Terro_0208
Enzymes [BR:
trs01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
Terro_0208
Messenger RNA biogenesis [BR:
trs03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
Terro_0208
Transfer RNA biogenesis [BR:
trs03016
]
Prokaryotic type
tRNA degradation factors
Terro_0208
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1_RRP5
Rho_RNA_bind
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
AFL86558
UniProt:
I3ZBE0
LinkDB
All DBs
Position
complement(242971..245793)
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AA seq
940 aa
AA seq
DB search
MPGHPYPHTDRELLRRVERAGGRAGYKQLVRELGMGGGRERRMLLEQLAKMTARGALVKI
DAEQWALPQVHTERVKNDTGRRAVAQDRKRLVHDRSAARSDLIAGKLQLHRDGFGFVRPT
DATTQSDGDYFIPPHDLNGAMQGDIVLVLPAPPSRDGRKSGRIMRVLTRRNPTVVGIFHA
AGARGRSEDMRLRGSYVVPLDERMTQPVLIENDQDLPSSAITPHRTLGAEAAANDHQWDG
TLEDLNGLAVDVEITQYPTDNSPARGRVIEVLGDPDAFGVDVEIIIRKHHLPHVFPAGVL
AEAEDAAERNVASLLEEELNLRRDFRDEPIVTIDGETAKDFDDAVLVRKHADNTWELQVH
IADVAEYVRDNSDLDLEARLRGNSVYFPDRAIPMLPQQLSNGECSLRPDEDRMVLSCIAR
IDDEGNVLGYEICEGLIRSARRMTYTNVQKILDGDEEVRKLYEPLLPQFERMYELALKLN
GKRVRRGSIDFDLPEPVIDFNELGAMQGVRKAERAWANRIIEEFMLCANECVARWIETSG
VPGMYRIHEMPDPKRIIDFEDAAAAFGITLGVGALPVKSVTMKSDRRDQQRRGQQGRVAH
KAREHEVSTAAIEVTPHMYQRLAAKIHGRPEERILSYLMLRSLKQAKYSEKNEGHFALAA
PAYTHFTSPIRRYPDLVVHRILKTLLADGADPFGDAEEIAAPQGYLGIDEAPKRDVHHGE
QQFEDVYPKDELIAIAQECSETERRAADAERELIEWKKIKFMTDRVGEDFDAMILSVTKY
GMFVELADMFVEGLVPIFTLTDDHYTYRETTREIRGGKSNKTYRPGMKVRVLLDRIDRGN
RRLQFAVIPDHAAGETALPEGVRPFPKRASRSTERREKTVAEAPTRTRKPSPRSAKRSKA
KAAPLSSSSPFAKFGADGSSVRKKKNKDRIAASKKKGKKR
NT seq
2823 nt
NT seq
+upstream
nt +downstream
nt
atgccgggccacccttatccccacactgatcgcgaactcctccgccgtgtcgaacgtgcg
ggcggccgcgcaggctacaaacagctcgtccgcgaactcggcatgggcggcggccgtgaa
cgccgcatgctcctcgagcagctcgccaagatgaccgcccgtggcgccctcgtcaaaatc
gacgcggagcaatgggctctgccgcaggtccacaccgagcgcgtcaagaacgacaccggc
cgccgcgccgtcgcgcaggaccgcaagcgcctcgtacacgaccgcagcgccgcccgcagc
gacctcatcgcaggcaagctccagctccatcgcgacggcttcggcttcgtccgccccacc
gacgccaccacccagagcgacggtgactacttcatcccgccccacgatctcaacggagcc
atgcagggcgacatcgtcctcgtcctccccgcaccgccctcgcgcgacggccgcaaatcc
ggccgcatcatgcgcgtcctcacccgtcgcaaccccaccgtcgtcggcatcttccacgcc
gccggtgcacgcggccgcagcgaagacatgcgcctccgcggcagctacgtcgtcccgctc
gacgagcgcatgacgcagcccgtcctcatcgaaaacgatcaggacctcccgtcctccgcc
atcacgccgcaccgcaccctcggtgccgaagccgcagcgaacgaccaccaatgggacggc
acgctcgaagacctcaacggcctcgccgtcgacgtcgaaatcacccaataccccaccgac
aactcccccgcacgcggccgcgtcattgaagtcctcggcgatcccgatgccttcggcgtc
gacgtagaaatcatcatccgcaaacaccatctgccgcacgtcttccccgccggcgtcctc
gccgaagcggaagacgcagccgagcgcaacgtcgcctcgctcctcgaagaggaactcaat
ctccgccgcgacttccgcgacgaacccatcgtcaccatcgacggcgaaaccgcgaaagac
ttcgacgacgccgtcctcgtccgcaagcacgccgacaacacctgggagctacaggtccac
atcgccgacgtcgccgagtacgtccgcgacaacagcgacctcgacctcgaagcacgcctg
cgcggcaacagcgtctacttccccgaccgcgcgatccccatgctgccgcagcaactctcc
aacggcgaatgttcactgcgtcccgacgaagaccgcatggtcctctcctgcatcgcacgc
atcgacgacgagggcaacgtcctcggctacgagatctgcgaaggcctcatccgttccgca
cgccgcatgacctacaccaacgtgcagaagatcctcgacggcgacgaagaagttaggaag
ctttacgaaccacttctaccgcagttcgaacgcatgtacgaactcgcgctcaagctcaac
ggcaaacgcgtccgccgaggctccatcgacttcgaccttcccgagcccgtcatcgacttc
aacgaactcggcgccatgcagggcgtccgcaaggccgagcgcgcctgggccaaccgcatc
atcgaagagttcatgctctgcgccaacgagtgcgtcgcacgctggatcgaaaccagcggc
gtccccggcatgtaccgcatccacgagatgcccgaccccaagcgcatcatcgactttgaa
gacgcagccgcagccttcggcatcaccctcggcgtcggcgcgctacccgtcaagtccgtc
acgatgaagtcggaccgccgcgaccagcaacgccgcggtcagcagggtcgcgtcgcacac
aaggcacgcgagcacgaagtctccaccgccgccatcgaagtcacgccgcacatgtaccag
cgcctcgccgcaaagattcacggccgcccggaagagcgcatcctcagctacctcatgctg
cgttccctcaagcaggccaagtactctgagaaaaacgagggccacttcgccctcgccgca
cccgcctacacacacttcacctcacccatccgccgctaccccgatctcgtcgtccatcgc
attctcaagacactcctcgccgacggcgcagaccccttcggcgacgcagaagagatcgcc
gcgccacagggctacctcggcatcgatgaggcaccgaagcgcgacgtgcatcacggcgag
cagcagttcgaagacgtctaccccaaggacgaactcatcgccatcgcgcaggagtgcagc
gagaccgagcgccgcgccgccgacgccgaacgcgaactcatcgagtggaagaagatcaag
ttcatgacggaccgcgtcggcgaagacttcgatgcgatgatcctctccgtcaccaagtac
ggcatgttcgtcgaactcgccgacatgttcgtcgaaggcctcgtccccatcttcacgctc
accgacgaccactacacctatcgcgaaaccacccgcgagatccgcggcggcaagagcaac
aagacctaccgccccggcatgaaggtgcgcgtgcttctagaccgcatcgaccgcggcaat
cgccgcctgcaatttgccgtcatccccgaccacgccgccggcgaaaccgctctgccagag
ggcgtgcgccccttcccaaaacgcgccagcagatccaccgaacgccgcgaaaagacagtc
gcggaagctcccacccggacacgcaaaccaagcccacgctccgcaaaacgcagcaaggcg
aaggcagccccacttagctccagctcccccttcgcaaagttcggcgcagacggctcctca
gtccgcaaaaagaagaacaaagaccgcatcgccgccagcaagaaaaagggcaagaagcgc
tga
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