Terriglobus roseus: Terro_4204
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Entry
Terro_4204 CDS
T02140
Name
(GenBank) RNA polymerase, sigma 70 subunit, RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
trs
Terriglobus roseus
Pathway
trs02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
trs00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
Terro_4204
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trs03021
]
Terro_4204
Transcription machinery [BR:
trs03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
Terro_4204
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
HTH_20
ERM_helical
Put_DNA-bind_N
DUF4094
Motif
Other DBs
NCBI-ProteinID:
AFL90409
UniProt:
I3ZME1
LinkDB
All DBs
Position
4983355..4985052
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AA seq
565 aa
AA seq
DB search
MAEEIDKYEEDVDRMIDTGKEKGYLTYGEVNDLIPEGITSADDLDDLLTTINTQGIDVLN
GDDKFDGGRDKYGEESEENDDVELDLTPGQLEKTNDPVRMYLREMGTVPLLTREGEVEIA
KRIERGQLRVMKAISRSSIVIREITALGEDLKRGVRNVKEVVTFDEDELTEDVLAARVKQ
TVKRIDALVKHQAEAQSAMDKLAEGKAKTQKEQRKLRWMAGRERVKVTRIVRELKYTNAE
KKRLLDKVNKTVDSMRTLERQMKNLDIKFEASKSEELKKEYRRQQKNCKVDLDRLEAEAG
LTTEILKRTQREMVQGDMDAERAKRELIEANLRLVVSIAKKYTNRGLQFLDLIQEGNIGL
MKAVDKFEYRRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLIRTSRQLVQ
ELGREASSEEIAKRMDIPVAKVRKVLKIAQEPISLETPIGEEEDSHLGDFIEDRMAVSPS
DAVIAVNLKEYTSQVLRTLTPREERVIKMRFGLEDGSEHTLEEVGQSFQVTRERIRQIEA
KALRKLRHPSRSRKLKAFVDGVKEY
NT seq
1698 nt
NT seq
+upstream
nt +downstream
nt
gtggccgaagagatcgataagtacgaagaagacgtagaccggatgattgataccggtaag
gaaaaaggctacctcacatacggtgaggtgaacgacctgattccggaaggcatcaccagc
gcggacgacctggatgacctgctgacgaccatcaacacgcagggcatcgacgtgttgaac
ggcgatgacaagtttgatggtggccgtgacaaatacggcgaagagtccgaagagaatgac
gacgtcgagcttgatctgacgcccggtcaactcgagaagaccaatgaccccgtccgcatg
tacctgcgtgagatgggcaccgttccgctgctgacgcgcgaaggtgaagtcgaaatcgcc
aagcgcattgagcgtggacagctccgcgtcatgaaggcgatctcgcgttcgtcgatcgtt
atccgcgagatcaccgcactgggcgaagacctgaagcgcggcgttcgtaacgtgaaggaa
gtcgtcacgttcgacgaggatgagctgacggaagacgttctggccgcacgcgtcaagcag
acggtcaagcgcatcgatgcgctcgtcaagcaccaggccgaggcccagtccgcaatggac
aagctggccgaaggcaaggcgaagacacagaaggagcagcgcaagctgcgctggatggcc
ggacgcgaacgcgtcaaggtcacgcgcatcgtccgcgaactgaagtacaccaacgcggag
aagaagcgcctgctcgacaaggtcaacaagaccgtcgacagcatgcgcacgcttgagcgc
cagatgaagaacctcgacatcaagtttgaggcctccaagtcagaagagctcaagaaggaa
taccgccgccagcagaagaactgcaaggtcgatcttgatcgcctggaagcggaagccggc
ctcaccaccgagatcctcaagcgcacacagcgcgagatggtccagggtgacatggatgca
gagcgcgccaagcgtgagctgatcgaggccaacctgcgcctcgtcgtctccatcgcgaag
aagtacaccaaccgcggcctgcagttcctcgacctgattcaggaaggcaacatcggcctg
atgaaggccgtcgacaagttcgagtatcgccgcggctataagttctcaacgtacgcaacg
tggtggatccgccaggcgatcacgcgcgccatcgccgatcaggcccgcaccatccgtatc
ccggtgcacatgatcgagacgatcaacaagctcatccgtaccagccgtcagctggtgcag
gagcttggccgcgaagcgagctcggaagagatcgcaaagcgtatggatatccccgttgcg
aaggtccgcaaggtcctcaaaatcgcacaggagcccatctcgctcgagacgcccatcggt
gaagaggaagattcgcaccttggcgacttcatcgaagatcgcatggccgtgtcgccctca
gacgccgtgatcgcggtcaacctgaaggagtacaccagccaggttctacgcaccctgacg
ccgcgtgaagagcgcgtcatcaagatgcgtttcggcctggaagacggtagcgaacacacg
ctggaagaggtaggtcagagcttccaggtaacgcgtgagcgcatccgccagatcgaggca
aaggcactccgcaagctccgtcaccccagccgcagccgcaagctgaaggcgttcgtcgac
ggtgtcaaggaatactaa
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