Tenacibaculum retecalamus: PG912_00095
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Entry
PG912_00095 CDS
T08858
Name
(GenBank) AAA family ATPase
KO
K03546
DNA repair protein SbcC/Rad50
Organism
trt
Tenacibaculum retecalamus
Brite
KEGG Orthology (KO) [BR:
trt00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
trt03400
]
PG912_00095
DNA repair and recombination proteins [BR:
trt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
PG912_00095
Archaeal homologous recombinant proteins
PG912_00095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SbcC_Walker_B
AAA_29
ABC_tran
RxLR_effector
AAA_21
Motif
Other DBs
NCBI-ProteinID:
WBX71243
LinkDB
All DBs
Position
19463..23116
Genome browser
AA seq
1217 aa
AA seq
DB search
MKILKIELQNINSLKSDTPIVIDFENEQFKDVGLFAITGSTGAGKTTILDAITIALYHNV
PRFSGTKGSLIDVVSHSANDAFTRVTFENNNFIYEAFWGIRIADKSGKKYKNAKEEVSLK
NLTTDVIIATQKRALITEVHKVTQLDYNQFLRSVMLAQGDFASFLSAKGSDKGKLLEQIT
GEEIYKKIGQGVLDRKSKEDKKLKDIQAKINSEDVLTTEEKKALKQKDTILTSDINTIEK
ELKATQVIADWYVQFDKLTSEAKEQEEAVKSIDLYIKKHQTELDALALNEKAAPFKELIQ
DLNRTEKEQLQKIAILKNIENQLAQLKPTIDSLEKLVSTETSLFEKANKEFSEWLPKFEF
ITKLDGQLKNEAVQKEKNTQQLKVVAEQIERLKEEEKSILKEITVTTVKIEKTALFLNEN
KFLKEVADKISSWTKDLTTLKASKQSLKEDVDFVAFKKKEVLKNTDLLTTDVELLAKKSI
EIATIEKEYIRISDELAKKNIQQLLKNKEKLLIQKDNWEQFKNISEQTLKTKAAQTEIET
EQHKLVNASKLIEEKLKLVKTAFENQEKAVSDASKILDLEKSIANYESDRLRLKAGEPCG
LCGSTAHPFVDDSKINEVSNAELEFNSRTKKLQELSTSKSTLEVKKAQIITTIDGLNKQS
KAIVIALGDFEVSASKINIQCELTDVDKINTTLKSTSEALMILNNDIVIAQKLQTAKNES
SEKINSFKEGLGTLTTSVATKKEHIKNSTTEIETKEQSIARLNATCSNLENDLRVKLAKY
NYLLPPVETIDIFIQNIEASISNYNKETQVFNTLTSELTVLNNNVKNNKNQQEKDDKIYK
EYFKNKEENDVKIKDFTTKRFAILPLNVTVANKRERLQLVVNQSKEKLDKHKKNLQKHLD
TKTEVVALKTNTAKEQADSITTLTNLKSILANDLNQSDFTTKEEIEKALLSKEDLEKYTQ
NKERIKENQITLKTKKESNLKAFEVLNKQRAFEISALENKVVLEDLSIKNKYFLTEKGKI
VEAFRKDQEIRDRNKEVSKKIDAQAKVCGIWAALFKVIGNSKDAFNVYVQRLTLKHLLDL
ANVHLYKLNKRYSLKMEEAYKPKEELNFNLIDHYQTDQARLVDTSSGGEKFIISLALALG
LSDLASKNVKIDSLFIDEGFGTLDSNTLETVISTLETLQAQGKMIGIISHVENLKERIPT
QIQITKKSNGISVVDVI
NT seq
3654 nt
NT seq
+upstream
nt +downstream
nt
atgaaaatattaaaaatagaattacaaaatattaattccttaaaatcggatacacccatt
gtaatcgattttgaaaatgagcaatttaaagatgttggtttatttgccattacaggttct
actggtgcagggaaaactacaattttagatgctattacgattgcattatatcataatgtt
ccacgttttagtggtacaaaaggttcgttgatcgatgtggtaagtcatagtgcaaatgat
gcttttactagagttactttcgaaaacaataattttatttatgaagctttttggggaatt
agaattgctgataaatcagggaaaaaatataagaatgctaaagaagaagtaagtttaaaa
aacttaacgaccgatgttattattgccactcaaaaaagagctttaattacagaagttcat
aaagtaactcagttagattataatcagtttttaaggtctgtaatgcttgctcaaggtgat
tttgcatcttttttatcggccaaaggatcagataaaggaaagttactagaacaaattaca
ggtgaagagatttataaaaaaataggtcaaggtgttttagatagaaaatcaaaagaagat
aaaaagttaaaagatattcaagctaaaatcaactcagaagatgttttaacaacagaagaa
aaaaaagcactaaaacaaaaagatacaatacttacttcggatattaatactattgaaaaa
gagttaaaagctacgcaagttatagcagattggtatgttcagtttgacaaactaacttca
gaggcaaaagaacaagaagaagctgttaaaagcatagatctttatataaaaaagcatcaa
acagaactagatgctttggctttaaatgaaaaagcagcaccatttaaagaacttattcag
gatttaaatagaacagaaaaagaacaacttcaaaaaatagcaatattaaaaaatatagaa
aatcaattagcacaactaaaaccaacaattgatagcttagaaaaattggtttcaacagaa
acatcgctgtttgaaaaagcaaataaagaattttcggaatggctgccaaagttcgaattc
ataacaaaactagacgggcaattaaaaaatgaagccgttcaaaaagaaaaaaatacgcaa
caactcaaagtagtagccgaacaaattgagcgtttaaaagaagaagaaaaaagcatactc
aaagaaattacagtaacgacggttaaaatagaaaaaacagctttatttttaaatgaaaac
aagtttttaaaagaggttgctgataaaatttctagttggacaaaagatctaacaacctta
aaagcgagtaaacaatctttaaaggaagatgtagactttgttgcgtttaaaaagaaagaa
gttctaaaaaacacggatcttttaactactgatgttgaattattagctaaaaaatcaata
gaaattgcaacgatagaaaaagaatatattcgaatttcagatgaattagcaaaaaaaaat
attcaacagcttttaaagaataaagaaaagttactgatacaaaaagacaattgggaacag
tttaaaaatatttctgaacaaacacttaaaaccaaagctgcacaaacggaaatagaaact
gagcaacataaattagtaaacgcttcgaaattaatagaagaaaagttaaaattggtgaaa
acagcttttgaaaatcaagaaaaagcagttagtgatgcctcaaaaattttagatttagaa
aaaagcattgcaaattacgaaagtgatcgcttgcgattaaaggcaggagaaccttgtggt
ttatgtggatctacggcacatccgtttgtagatgattccaaaataaatgaggtttctaat
gccgaattagaatttaattctagaacaaaaaaattacaagaactttcaacatctaagagt
acgttagaggtgaaaaaagcacaaattataactactattgatggattaaataagcaaagc
aaagccattgtaatagcgcttggagattttgaagtatcagcaagtaaaattaatattcag
tgtgaattaaccgatgttgataaaataaatacaacgttaaaatcaacttcagaagcgttg
atgattttaaataatgacatcgtaattgctcaaaaattacaaacagctaaaaatgaatct
tcagagaaaataaatagttttaaagaaggtttaggtacgttaacaacatcggttgctacc
aaaaaagagcatattaaaaacagcactaccgagattgaaactaaagagcaatcaatagcg
cggttaaatgcaacttgtagtaatttagaaaatgatttaagagtaaaactggcaaaatat
aattacctgttaccacctgttgaaacgatagatatttttattcaaaatatagaagcatct
attagtaattacaataaagaaactcaagtttttaatacactaacatcagaacttactgtt
ttaaataacaatgtaaaaaacaataaaaatcaacaagaaaaagatgataaaatttacaaa
gaatattttaaaaataaggaggaaaatgatgttaaaataaaagattttactacaaaacga
ttcgctattttaccattaaatgttacggttgctaataaaagagaacgattacagttggtt
gttaatcaaagcaaagaaaaattagataaacataaaaagaatttacaaaaacacctcgat
acaaaaacagaggtagtagctttaaaaacaaatacagctaaagaacaagctgattcaatt
acgactttaaccaatttaaaatcaattttagcaaacgatttaaatcagagtgattttact
actaaagaggaaatagaaaaagcgctattatctaaagaagatttagaaaaatacacgcaa
aataaagagcgtattaaagaaaatcagattactcttaaaaccaaaaaagaaagtaattta
aaagcttttgaagttttaaataaacagcgggcttttgaaatttcggcactagaaaataaa
gtggttttagaagatttatcaataaaaaataaatattttttaactgaaaaaggtaaaata
gtagaagcttttagaaaagatcaagaaataagagatcgaaataaagaagtttctaaaaag
atagatgcgcaagcaaaagtatgcggtatttgggctgcattatttaaagttataggaaat
tcgaaagatgcgtttaatgtgtacgttcagcgtttaaccttaaaacatttgttagacctt
gctaatgtgcatttgtataagttaaataagcgttattcattaaaaatggaagaagcgtac
aaaccgaaagaagagcttaattttaatttaattgaccattaccaaacagatcaggcaaga
ttggtagatacctctagcggtggcgaaaagtttattatcagtttagcgctggctctaggt
ttatcagatttagcgagtaaaaatgtaaaaatagattctttatttattgatgaaggtttt
ggtactttagatagcaatacattagaaacggtaatttctaccttagaaactttacaagca
caaggcaaaatgattggaattatatcgcatgtagaaaacttaaaagaacgtattcctact
caaatacaaatcaccaaaaagagcaacggaataagtgttgttgatgttatttaa
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