Tenacibaculum retecalamus: PG912_02610
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Entry
PG912_02610 CDS
T08858
Name
(GenBank) polyribonucleotide nucleotidyltransferase
KO
K00962
polyribonucleotide nucleotidyltransferase [EC:
2.7.7.8
]
Organism
trt
Tenacibaculum retecalamus
Pathway
trt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG912_02610
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trt03019
]
PG912_02610
03016 Transfer RNA biogenesis [BR:
trt03016
]
PG912_02610
Enzymes [BR:
trt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.8 polyribonucleotide nucleotidyltransferase
PG912_02610
Messenger RNA biogenesis [BR:
trt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
PG912_02610
Transfer RNA biogenesis [BR:
trt03016
]
Prokaryotic type
tRNA degradation factors
PG912_02610
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
KH_1
PNPase
S1
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
WBX71700
LinkDB
All DBs
Position
complement(528142..530376)
Genome browser
AA seq
744 aa
AA seq
DB search
MIPKVFREVIDLGDGRTISLETGKLAKQAHGSVVVQMGKAMLLCTVVSSYKAGTVDFLPL
TVDYREKFAAAGRYPGGFFKREARPSDGEVLTMRLVDRVLRPLFPKDYHSEVQVMIQLMS
HDEDVMPDALAGLAASAAIQLSDFPFECPISEARVARVNGEFVINPNRAQLAESDIDMMI
GASADSVMMVEGEMDEISEEEMADAIKFAHESIKIQCAAQVRLAEAFGKKETREYEGERE
DEEVAAKINDLAYDKCYAIAKKGTSKAERSAAFAEVKEEVKAAFTEEELADYGDLVGKYF
NKSQKAAVRELTLAEGLRLDGRKTDEIRPIWCEVDYLPSTHGSSIFTRGETQALATVTLG
TSRDAMKIDMPSYEGEENFYLHYNFPPFCTGEARPLRGTSRREVGHGNLAQRGLKGMIPD
DCPYTVRVVSEVLESNGSSSMATVCAGTMALMDAGVKMTRPVSGIAMGLISDGDRYAVLS
DILGDEDHLGDMDFKVTGTSEGITACQMDIKVKGLGYEILVNALKQARDGRLHILEKLTD
TIADANEEVKEHAPKMINRRIPNDMIGAFIGSGGKHIQELQKETGTTIVITEDAVTEEGI
IEILGTDPAGIEQVITRIESMLFKPQVGSAYQVKVIKMLDFGAVVEYMDAPGNEVLLHVS
ELAWERTENVTDVVNMGDIFDVKYFGQDPRTRKEKVSRKALLPKPEGFVARPPRDDKRSG
GRDNRSRDNRGRDDRKPREPRKEE
NT seq
2235 nt
NT seq
+upstream
nt +downstream
nt
atgattccaaaagtatttagagaggtcattgaccttggagatggaagaaccatctcatta
gaaacgggtaagttagcaaaacaagcccatggttcggttgttgttcaaatgggaaaagca
atgttgttatgtactgtagtatctagctacaaagcaggaacagttgatttcttaccatta
acggtagattatagagagaagtttgcagctgcaggtcgttatccaggtggtttctttaaa
agagaagctagaccaagtgatggtgaagtattaacaatgcgtcttgtagaccgtgtttta
cgtccattattcccaaaagattaccattcagaagtacaggtaatgatccaattaatgtct
catgatgaagatgttatgccagatgcattagcaggtttagcagcatcagcagctattcaa
ttatcagatttccctttcgaatgcccaatttctgaagcacgtgttgctagagtaaatgga
gaattcgtaattaacccaaacagagcacaattagcggaatctgacatcgatatgatgatt
ggagcatcagctgattctgtaatgatggttgaaggtgaaatggatgagatttctgaagaa
gaaatggcagatgcaattaaatttgctcatgaatctattaagattcagtgtgctgctcag
gttcgtttagctgaagctttcggaaagaaagaaacaagagaatacgaaggagaaagagaa
gacgaagaagttgctgcaaaaataaatgaccttgcttacgataagtgttatgctatcgct
aaaaaaggaacatctaaggcagaacgttctgctgcttttgctgaagtaaaagaagaagta
aaagctgcttttactgaagaagaattagcagattatggtgatttagttgggaaatatttc
aataaatctcaaaaagctgctgttcgtgaattaactttagctgaaggattacgtttagac
ggtcgtaagactgatgaaattagaccaatttggtgtgaagtagactacttaccatcaaca
catggttcatcaatctttactcgtggagaaacacaagcattagcaacagtaactttagga
acatctagagatgcaatgaaaatagatatgccatcttacgaaggtgaagaaaatttctat
ttacactataacttccctcctttttgtacaggtgaagcaagaccattaagaggaacatct
cgtagagaagttggtcatggtaacttagcgcaacgtggattaaaaggaatgattccagac
gattgtccttatacagtaagagttgtatctgaagtattagaatctaacggttcttcttct
atggctacagtttgtgctggtacaatggcattaatggacgcaggtgttaaaatgacaaga
ccagtttctggtattgctatgggattaatttctgatggtgatcgttacgcagttttatct
gatattttaggggatgaagatcacttaggtgatatggactttaaagtaactggtacttct
gaaggaattactgcatgtcagatggatattaaagtaaaaggattaggttacgagatttta
gtgaatgcattaaaacaagctcgtgacggtcgtttacatattttagaaaaattaacagat
acgattgctgatgcaaacgaagaagttaaagagcatgctcctaaaatgattaacagacgt
attcctaatgatatgattggtgcatttattggatcaggaggtaaacatattcaagaatta
cagaaagaaacaggaactacaattgtaattactgaagatgctgtaactgaagaaggaatt
attgaaatcttaggaactgatcctgctggaatagaacaagttattactcgtattgagtct
atgctttttaaaccacaagtaggtagtgcttaccaggttaaagtaattaaaatgttagat
tttggtgcggttgtagaatatatggatgctccaggaaacgaagttttattacacgttagt
gaattagcttgggaacgtacagaaaatgttaccgatgtagtaaatatgggtgatattttt
gacgtgaagtattttggtcaagatccaagaactcgtaaagaaaaagtttctcgtaaagca
ttgttaccaaaaccagaaggttttgttgcaagaccaccaagagatgacaaacgttctgga
gggcgtgataacagaagcagagataatcgtggacgtgatgacagaaaaccaagagaacct
agaaaagaagaataa
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