Tenacibaculum retecalamus: PG912_03855
Help
Entry
PG912_03855 CDS
T08858
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
trt
Tenacibaculum retecalamus
Pathway
trt03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
trt00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
PG912_03855
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
trt03021
]
PG912_03855
03400 DNA repair and recombination proteins [BR:
trt03400
]
PG912_03855
Enzymes [BR:
trt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
PG912_03855
Transcription machinery [BR:
trt03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
PG912_03855
DNA repair and recombination proteins [BR:
trt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
PG912_03855
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
RNA_pol_A_CTD
HHH_XRCC3_RpoA
RNA_pol_L_2
Fungal_KA1
Motif
Other DBs
NCBI-ProteinID:
WBX71921
LinkDB
All DBs
Position
782450..783442
Genome browser
AA seq
330 aa
AA seq
DB search
MAILNFQKPDKVIMIESTDFTGRFEFRPLEPGFGLTVGNALRRVLLSSLEGFAITSLRVD
GVDHEFSTIQGVVEDVTEIILNLKQVRFKKQIEETDRETVSISVSGQEQLTAGDLQKFTS
GFQVLNPDLVLCNLDKSVSFNAEITIEKGRGFVPAEENKRAGAPLGTIFTDSIYTPIKNV
KYAVENFRVEQKTDYEKLVFDIDTDGSINPKDALTEAAKILIHHFMLFSDERITLEADEI
AQTETYDEESLHMRQLLKTKLVDMDLSVRALNCLKAAEVDTLGDLVSFNKSDLMKFRNFG
KKSLTELDELVANKSLNFGMDLSKYKLDRD
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atggcaattttaaattttcagaagcctgataaagtaataatgattgaatctactgatttt
acaggtagatttgagttcagacctcttgaaccaggttttggattaacagtaggaaacgct
ttaagaagagtattattatcttcattagaagggtttgcaattacatcattacgtgttgac
ggtgtagaccatgagttctcaacaattcaaggagttgtagaagatgtaacagaaatcatc
ttaaacttaaaacaagttcgttttaagaaacaaattgaagagactgatagagaaacagta
tctatatcagtatcaggtcaagaacaattgactgcaggagatttacagaaatttacctca
ggttttcaagtattaaatccagatttagtattatgtaacttagataaatctgtaagtttt
aatgctgaaatcactatcgaaaaaggtagaggtttcgtaccagcagaagaaaataaaaga
gcaggtgcacctttaggaacaatttttacagattctatttacactcctataaagaatgta
aagtatgctgttgaaaattttcgtgtagagcaaaagacagattacgaaaagttagttttc
gatatcgatactgacggttctatcaaccctaaggatgccttaacagaagcagctaaaatt
ttaatccatcactttatgttattctctgatgagcgtatcactttagaggcagatgaaatt
gctcaaactgaaacatatgatgaggaatcattacatatgcgtcagttattaaagacgaaa
ttagttgatatggatttatcagttcgtgctttaaactgtttaaaagctgcagaagttgat
actttaggagatttagtatcattcaacaaaagcgatttaatgaaatttagaaatttcggt
aaaaaatcattaactgaattagatgagttagtggcaaataagagccttaattttggaatg
gacttaagcaaatacaaattagatagagattaa
DBGET
integrated database retrieval system
