Tenacibaculum retecalamus: PG912_05770
Help
Entry
PG912_05770 CDS
T08858
Name
(GenBank) RecQ family ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
trt
Tenacibaculum retecalamus
Pathway
trt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG912_05770
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trt03019
]
PG912_05770
03400 DNA repair and recombination proteins [BR:
trt03400
]
PG912_05770
Enzymes [BR:
trt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
PG912_05770
Messenger RNA biogenesis [BR:
trt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG912_05770
DNA repair and recombination proteins [BR:
trt03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
PG912_05770
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
RecQ_Zn_bind
DUF6494
Motif
Other DBs
NCBI-ProteinID:
WBX72250
LinkDB
All DBs
Position
complement(1192821..1194704)
Genome browser
AA seq
627 aa
AA seq
DB search
MYEASINILKHYWGHTSFRAPQQEIIAAVLEKKDTIALLPTGGGKSICFQVPALINDGVC
IVISPLIALMQDQVESLVAKDVKATVIPSGSSQDDIITLFDNIRFGKIKFLYISPERLQS
RFIQEKIKQLEVNLIAIDEAHCISEWGHDFRPSYQHIALLKELHPTTNIIALTATATKKV
IDDIIVSLGLENPTVFKKSFYRENLAYQIFKTDDKLRKLHQIFTKTKAPAIVYVNARIKT
KEISAYLNANGFKSTFYHGGLTSLEKQLSFDSWMTEKTPIIVATNAFGMGIDKPNVRVVI
HLNLPGSIENYIQEAGRGGRNGNKAFSVVLTNDNDIKLSKELLEKSLPIIEDIKLVHRKL
YQHFQIAKGELIETAFDFNFLEFCSKYKLIPNKTYNALQILNSNGIIELNSNFQQKSTIQ
FLVSSKQILLYSQQNPSSKNFVQTLLRLYGGVFENLVKIDEFYIAKKVGVTSSRVIEELE
RMAEKEMLEYNQATNNSELFFLHPREDDTTVNRVSKNIRLYLGQKKQKNDDLLAFIKKNN
VCRSVQLLHYFNETSNKECGICDICLQAKQNIVIKPADILNLLQEYKTLTAYEISTHLNE
KEANILILLRTLLSEEKINAINNKYFL
NT seq
1884 nt
NT seq
+upstream
nt +downstream
nt
atgtatgaagcatccataaacatattaaaacattattggggacacacttcttttagagct
ccgcagcaagaaattatagcggctgtattagaaaaaaaagataccatcgctttattaccc
acaggtggcggtaaatctatttgttttcaagttcctgctttaataaatgatggtgtttgt
attgttatttcgccattaatagcattaatgcaagaccaagtagaaagtcttgttgctaaa
gacgtaaaagctaccgttattccttctggaagctcccaagatgatattattacacttttt
gataatatccgtttcggaaaaataaagttcttatatatttctcccgagcgcttacaatct
cgttttattcaagaaaaaataaagcaattagaggtaaatttaattgcaattgatgaagcg
cattgtatttctgagtggggacacgattttcgtccttcttatcagcatatagctctttta
aaagaactacatccaacaacaaatattattgctttaacagcaacagctaccaaaaaagtt
attgatgatattatagtttctttaggcttagaaaatcctacggtttttaaaaaatctttt
tatagagaaaatctagcgtatcaaatttttaaaacggatgacaaactccgtaaactacat
cagatttttactaaaacaaaagcaccagcaattgtttatgtaaacgctagaattaaaacc
aaagaaattagtgcttatttaaatgcaaatggttttaaaagcactttttatcacggcgga
ttaacaagtttagaaaaacaactttcttttgatagttggatgaccgaaaaaacaccaatt
attgttgctacaaacgcttttggtatgggaatagacaaacccaatgttcgggttgttatt
cacttaaaccttccaggatctatagaaaattatattcaagaagctggtcgtggcggacga
aatggtaacaaagctttttctgttgttctaacaaatgataacgatattaaacttagtaaa
gagttattagagaaatcgctacctattattgaagatataaaactggtacatcgaaagtta
tatcaacattttcaaattgccaaaggagaacttatagaaactgctttcgattttaacttt
ttagaattttgcagtaaatacaagttaattcctaataaaacctacaacgctttacagata
ttaaatagtaacggaatcatagaattaaattctaattttcaacaaaaatctaccattcaa
tttttagtttcaagtaaacaaattttgctgtactctcaacaaaatccatcttctaaaaac
tttgtacaaacattattacgcttgtatggtggtgtttttgaaaacctggtaaaaattgat
gagttttatatcgctaaaaaagtaggtgttacttcttcgcgtgttattgaggaattagaa
cgaatggctgaaaaagaaatgcttgaatacaaccaagcaaccaataattcagaattattt
tttctgcatcctagagaagacgatacaactgtaaatcgtgtttctaaaaacatccgtttg
tatttaggtcaaaaaaaacaaaaaaatgatgatttattagcgtttattaaaaaaaataac
gtttgcagaagtgtacaattgttacattactttaatgaaactagtaataaagaatgcggt
atttgcgatatttgcttgcaagcaaaacaaaacattgttataaaaccggctgatattctt
aatttattgcaagaatataaaaccttaacagcatacgaaatcagtacacatctaaacgaa
aaagaagcaaacattttaatacttttgcgcacgcttttatccgaagaaaaaataaacgct
attaataataaatactttttataa
DBGET
integrated database retrieval system
