Tenacibaculum retecalamus: PG912_06000
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Entry
PG912_06000 CDS
T08858
Symbol
ffh
Name
(GenBank) signal recognition particle protein
KO
K03106
signal recognition particle subunit SRP54 [EC:
3.6.5.4
]
Organism
trt
Tenacibaculum retecalamus
Pathway
trt02024
Quorum sensing
trt03060
Protein export
trt03070
Bacterial secretion system
Brite
KEGG Orthology (KO) [BR:
trt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03060 Protein export
PG912_06000 (ffh)
09130 Environmental Information Processing
09131 Membrane transport
03070 Bacterial secretion system
PG912_06000 (ffh)
09140 Cellular Processes
09145 Cellular community - prokaryotes
02024 Quorum sensing
PG912_06000 (ffh)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02044 Secretion system [BR:
trt02044
]
PG912_06000 (ffh)
Enzymes [BR:
trt01000
]
3. Hydrolases
3.6 Acting on acid anhydrides
3.6.5 Acting on GTP to facilitate cellular and subcellular movement
3.6.5.4 signal-recognition-particle GTPase
PG912_06000 (ffh)
Secretion system [BR:
trt02044
]
Sec (secretion) system
Prokaryotic Sec-SRP core components
PG912_06000 (ffh)
Eukaryotic Sec-SRP protein
PG912_06000 (ffh)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SRP54
SRP_SPB
SRP54_N
AAA_22
Zeta_toxin
CbiA
CLP1_P
nSTAND3
APS_kinase
AAA_33
cobW
ATPase
AAA_30
AAA_31
KTI12
AAA_17
AAA_18
MMR_HSR1
ATP_bind_1
AAA_14
T2SSE
ArsA_ATPase
NACHT
AAA
AAA_16
TsaE
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
WBX72290
LinkDB
All DBs
Position
complement(1236978..1238306)
Genome browser
AA seq
442 aa
AA seq
DB search
MFNNLSEKLDKALHTLKGHGKITEVNVAETLKEVRRALLDADVNFKIAKDFTKRVQQKAL
GQDVLTTLNPGQLMVKLVKDELTELMGGDTVGVNLGGSLSVILMSGLQGSGKTTFSGKLA
NFLKTKKSKEVLLVGCDVYRPAAINQLQVVGEQIGVDVYAEVENKNPVEISLNAIKHAKA
NGKNVVIIDTAGRLAVDEEMMNEISNIHKAVNPQETLFVVDSMTGQDAVNTAKAFNDILN
FDGVVLTKLDGDTRGGAALSIKSVVNKPIKFIGTGEKMDAIDVFYPDRMADRILGMGDVI
SLVERAQEQYDEDEARKLQKKIAKDQFGFDDFLSQIQQIKKMGSMKDLVGMIPGAGKALK
DVEIEDDAFTGIEAIIQSMTPLERSTPSSINASRKKRIAKGSGTSVQEINQLMKQFNQMS
KMMKMMQGGGGKKMMQMMKGMK
NT seq
1329 nt
NT seq
+upstream
nt +downstream
nt
atgtttaataatttaagtgaaaagttagataaagcgttacatacgcttaaaggacacgga
aaaattactgaagttaatgttgcagaaacgctaaaagaagttcgtagagctttattagac
gccgatgttaactttaagatagctaaagattttactaaaagagtacagcaaaaagcctta
ggtcaagacgtattaactacgttaaatcctgggcaattaatggtaaagttggttaaagac
gaacttactgaattaatgggaggtgatactgttggtgttaacttaggcggttctcttagt
gtaattttaatgtctggtttacaaggatctggtaaaactaccttttctggtaaattggct
aatttcttaaaaactaaaaaatctaaagaagtattattagtaggttgtgatgtgtatcgt
cctgccgctattaatcagttacaagttgttggagaacaaattggcgttgatgtatatgca
gaagtagaaaataagaatcctgttgaaatttctttaaatgcaattaagcatgcaaaagca
aacggtaagaatgtagttattattgatactgctggtcgtttagctgttgatgaagaaatg
atgaatgaaatttctaacattcacaaagctgttaatccgcaagaaacattatttgttgta
gattcaatgacagggcaagatgctgtaaatacagcaaaagcttttaatgatattttaaac
ttcgacggtgttgtattaaccaaattagatggtgatacacgtggtggagctgctttatcg
ataaaatcggtagtaaataaaccaattaagtttattggtactggtgaaaagatggatgct
attgacgtattctatccagatcgtatggcagatcgtattttgggtatgggagacgttatc
tctttagtagaacgtgctcaagaacaatatgatgaagatgaagctagaaaattacaaaag
aaaattgctaaagatcaatttggttttgatgactttttaagtcaaatacaacaaatcaaa
aaaatgggtagcatgaaagatcttgtaggtatgattcctggtgcaggaaaagcccttaaa
gatgtcgaaatagaagatgatgcctttacaggtatcgaagccatcatacaatctatgact
ccgctagaaagaagtacgccttcttccataaacgcaagtcgtaagaagagaatagcgaaa
ggttctggtacctctgttcaagaaataaaccagttaatgaagcaatttaatcagatgagc
aaaatgatgaaaatgatgcaaggtggtggcggaaaaaaaatgatgcaaatgatgaaagga
atgaaataa
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