Tenacibaculum retecalamus: PG912_06580
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Entry
PG912_06580 CDS
T08858
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
trt
Tenacibaculum retecalamus
Pathway
trt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG912_06580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trt03019
]
PG912_06580
03009 Ribosome biogenesis [BR:
trt03009
]
PG912_06580
Enzymes [BR:
trt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PG912_06580
Messenger RNA biogenesis [BR:
trt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG912_06580
Ribosome biogenesis [BR:
trt03009
]
Prokaryotic type
rRNA helicases
PG912_06580
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
RecG_N
CMS1
UvrA_inter
Motif
Other DBs
NCBI-ProteinID:
WBX72393
LinkDB
All DBs
Position
complement(1372026..1373921)
Genome browser
AA seq
631 aa
AA seq
DB search
MSTFLDLGLKEPINKALTDLGYEKPTVIQEKAIPQIISSTADLKAFAQTGTGKTAAFSLP
IIEQIDYSDKNTQAIILSPTRELAVQIGNNIKEFAKYIPDLKVVTVYGGSNIEEQIRGLK
RGAQIVVGTPGRTVDLINRRALRLGNVKWLVLDEADEMLNMGFKDELDKVLDATPETKQT
LLFSATFPREVEAIARNYMDNPVEITSGEKNQGSDNVTHEYYVVNERTRYQALKRIADVN
TDIYAIIFCRTRRETQEVANNLIKDGYSADALHGDLSQQQRDSVMGKFRKKTIQILVATD
VAARGIDVNDLTHVINHKLPDQIENYNHRSGRTGRAGSKGISVVLVNNKEKGRLRSIERI
IKKKFEAKKVPTGKEICQNQLMHLIEKVKATEVNTEQIEEFLPSIYEKLEDLSREELVQK
FVSLEFNKFLSYYNKSDDLNDVSNRDSSRARSNDENMTRFFINLGRKDKLNPASLIGLIN
DQKIADKIEIGAIDILDTFSFFEIDKNFEKETLDAFGSNDADFNGRSVNIEITKSNRGGG
GGGRKPRGGGGGFSGRRSGGNDRGQEVLVEEVILVEVNLLTEVILEDVVTTVVLHLLLEE
VVVMVMLLLVLEENVKETKQRILYIKKATHK
NT seq
1896 nt
NT seq
+upstream
nt +downstream
nt
atgtcaacatttttagatttaggtttaaaagagcctatcaacaaagcattaacagattta
ggttacgaaaagcctactgtaattcaagaaaaagcaattccacaaattatttcatctacg
gcagatttaaaagcattcgcccaaacaggtactggaaaaactgctgcttttagtttacca
attatcgagcaaatagactactcagataaaaatacacaagctattatcttatctcctact
cgtgaacttgcagttcagataggaaacaacattaaagaattcgctaaatacataccagac
ttaaaagtggtaactgtatatggtggttctaatatcgaagagcaaattagaggtttaaaa
agaggtgcacaaatagttgtaggaactcctggtagaactgtcgatttaataaatcgtaga
gctttaagattaggaaacgtaaaatggctagttttagatgaagctgatgaaatgcttaac
atggggttcaaagacgaacttgataaagtattagatgcaactcctgaaacaaaacaaact
ttattattttcagcaacttttcctagagaagtagaagctattgctagaaattatatggat
aatcctgttgaaattacatcaggagaaaaaaatcaaggatcagataacgttactcacgaa
tactatgttgtaaacgaaagaacacgttaccaagcattaaaaagaattgcagatgtaaat
actgatatttacgcaattattttctgtagaacaagaagagaaacacaagaagtagccaac
aacctaataaaagacggttatagcgctgatgctttacacggagatttatctcaacaacaa
agagatagtgtaatgggtaaatttcgtaagaaaactattcaaatcttagttgcaactgat
gttgctgctcgtggaattgatgtaaacgatttaacacacgttatcaaccataaattacca
gaccaaatagaaaactacaatcaccgtagtggtagaacaggtagagctggtagcaaaggt
atttctgttgtattagtaaataataaagagaaaggtagattacgttctattgagcgtatc
atcaaaaagaaatttgaagctaaaaaagtacctacaggtaaagaaatttgccaaaatcaa
ttaatgcatttaattgaaaaggtaaaagctactgaagttaatactgaacaaattgaagaa
ttcttacctagtatctatgaaaaattagaagacttatctagagaagaattagttcaaaaa
ttcgtttctttagaattcaataaatttttatcttactacaacaagtctgacgatttaaac
gatgtatcaaacagagatagttcaagagctagatctaatgatgaaaacatgactcgtttc
tttatcaacttaggtagaaaagataaattgaatcctgcttcattaatcggtttaataaac
gatcaaaaaattgcagataaaattgaaatcggtgcaatcgatattttagatactttttct
ttctttgaaattgataaaaactttgaaaaagaaacattagatgcttttggatctaatgat
gctgactttaacggacgttctgtaaacattgaaattactaaatctaatcgcggtggcggt
ggaggcggaagaaaacctcgcggtggcggtggtggattcagcggaagaagaagcggtgga
aatgatagaggccaagaagttctggtagaagaagtgattctagtagaggtgaatcttcta
acagaagtgattctagaagacgtagtaacgacagtggttcttcatcttcttctagaagaa
gtagtggtgatggtaatgcttctgctggttttggaagaaaacgtaaaagagactaagcaa
agaatcttatatattaaaaaagcaactcataaatga
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