Tenacibaculum retecalamus: PG912_08590
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Entry
PG912_08590 CDS
T08858
Symbol
rny
Name
(GenBank) ribonuclease Y
KO
K18682
ribonucrease Y [EC:3.1.-.-]
Organism
trt
Tenacibaculum retecalamus
Pathway
trt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG912_08590 (rny)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trt03019
]
PG912_08590 (rny)
Messenger RNA biogenesis [BR:
trt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
PG912_08590 (rny)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_Y_N
HD
KH_1
HDOD
KH_KhpA-B
KH-I_KHDC4-BBP
Motif
Other DBs
NCBI-ProteinID:
WBX70337
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Position
complement(1823089..1824654)
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AA seq
521 aa
AA seq
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MDGILFPVLAGIIGLVIGFIIAKILEKSNANKLIQETKKQARNIVKEAKVEADAIKKDKI
LQAKEKFIELKSEHEKVIFSREKKMSDVEKRIRDKESQVSSELDKNKKLNKSVEKKEADF
DYKLDFLDKKESDLEKQHKRQVDMLEQISGLSAEDAKTELVSSLKDEAKADAMSFVQNAV
EEAKMTAQQDARKIVLNTIQRVGVEQAVENCVSVFNLESDDVKGRIIGREGRNIRALEAA
TGVEIIVDDTPEAIILSCFDPVRREIARLSMHKLVTDGRIHPARIEEVVKKTEKQISQEI
IEVGKRTVIDLGIHGLHPELIKIVGRMKYRSSYGQNLLQHSREVANLCGIMASEMGLNAK
AAKRAGLLHDIGKVPETESELPHALLGMQWAEKFGEKPDVCNAIGAHHDEIEMKSLLSPI
VQVCDAISGARPGARRQVLDSYIQRLKDLEDIAFGFSGVQKAYAIQAGRELRVMVESAKV
NDTKAAELSFNISQKIQNDMTYPGQVKVTVIRETRAVNVAK
NT seq
1566 nt
NT seq
+upstream
nt +downstream
nt
atggatggaatattatttcctgtattagcaggaattataggattagtaataggatttatt
attgctaaaatattagagaaatctaatgcaaataagttaatacaagaaacaaaaaagcaa
gccagaaatattgtaaaagaagcgaaagtagaagcggatgcaataaaaaaagataaaata
ttacaagcgaaagaaaagtttatcgaactaaaatctgagcatgaaaaagttattttttcg
agagaaaaaaagatgtctgatgttgaaaagagaataagagataaagagagccaggtttct
tctgagttagataaaaataaaaaattaaacaaatctgtagagaagaaagaagcagatttt
gattataaattagattttttagataaaaaagaatcagatttagaaaaacaacacaaacgt
caagtagatatgttagagcaaatttctggcttatcagcagaagatgcgaaaacagaatta
gtttcgtcgttaaaagatgaagcaaaagcagatgcaatgtcgtttgtacaaaacgctgtt
gaagaagctaaaatgacagcgcaacaagatgctcgtaaaattgtattaaatacgatacaa
agagtaggggttgagcaagctgttgaaaactgtgtttctgtttttaatttagagtctgac
gatgttaaaggtagaattattggtcgtgaaggacgtaatattcgtgctttagaagccgct
accggagtagaaattattgttgatgatacacctgaagcaattattttatcttgttttgat
cctgttcgtagagaaattgctcgtttatcaatgcataaattagtaacggacggaagaatt
cacccagcgagaattgaagaagttgttaagaaaacagaaaaacaaattagtcaagaaatt
atagaagttggaaaacgtactgttatcgatttaggaattcatggtttacatcctgaattg
attaaaatagtagggcgtatgaaatatcgttcttcttatggtcagaatttattacaacac
tcgcgtgaagtagcaaatctttgtggtattatggcatcagaaatgggcttaaatgctaaa
gcggctaaacgtgctggtttactacatgatattggtaaagtgccagaaacagaaagtgaa
ttaccacatgctttattaggaatgcaatgggcagagaagtttggtgaaaagccagatgtt
tgtaacgccattggagctcaccacgacgagattgaaatgaagagtttattatctcctatt
gttcaggtttgtgatgctatttcaggggcaagaccaggcgcacgtcgtcaggtattagat
tcttacatacagcgtttaaaagatttagaagatatcgccttcggatttagtggtgtacaa
aaagcatatgctattcaggcaggtagagaattaagagtaatggtagaaagtgctaaggta
aatgacacgaaagcagcggaattatcatttaatatttcacaaaaaatacagaatgatatg
acgtatccagggcaagtaaaagttactgtgattcgtgaaacaagagctgttaatgttgct
aagtaa
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