Tenacibaculum retecalamus: PG912_11825
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Entry
PG912_11825 CDS
T08858
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
trt
Tenacibaculum retecalamus
Pathway
trt03030
DNA replication
trt03430
Mismatch repair
trt03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
trt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PG912_11825 (dnaE)
03430 Mismatch repair
PG912_11825 (dnaE)
03440 Homologous recombination
PG912_11825 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
trt03032
]
PG912_11825 (dnaE)
03400 DNA repair and recombination proteins [BR:
trt03400
]
PG912_11825 (dnaE)
Enzymes [BR:
trt01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
PG912_11825 (dnaE)
DNA replication proteins [BR:
trt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
PG912_11825 (dnaE)
DNA repair and recombination proteins [BR:
trt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
PG912_11825 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
RNase_T
tRNA_anti-codon
HHH_3
Isochorismatase
Intimin_C
Motif
Other DBs
NCBI-ProteinID:
WBX70898
LinkDB
All DBs
Position
2495151..2499524
Genome browser
AA seq
1457 aa
AA seq
DB search
MYLIFDTETTGLPKSWNAPITDTNNWPRATQIAWQLHDELGNLIEHNDFLIKPNGFNIPY
DAERIHGISTDLAQEQGIELSEGLALFNEALSKTKFIVGQNLAFDINIMGCEFHRLGVDN
NLTELPILDTCTEHTAKMCQIPGGRGGKFKLPTLTELHQHLFGDGFGDAHNATADVEATT
RCFLELIRLRQFTKEQLQVTDDFFDRYTQNNPSVTQIIGLNHLNLKRESEKIRARKEKAK
GETTTISTNEGLAELKNSQFAHLHNHTQYSVLQSTIQIGNIVKAAAKDNMSAVAMTDTGN
MMAAFHFVQAVLNHNKAVDSANIEAIEKGEEPTQKPLKPIVGCEFNICTDHTNKSQKDNG
YQVVLLAKNKKGYHNLAKMSSIAFVDGFYYIPRIDKKVVEQYKEDIIVLTGSLYGEVPSK
ILNVGEAQAEEALLWWKEQFGDDLYIELMRHNQEDEKVVNETLLKFSKKHNVKTVASNNT
FYLSKEDANAHDILLCVKDGEKQATPKGRGRGYRYGLPNDEYYFKSSDEMKTLFADLPEA
IINIQEIVDKIEPYTLARDVLLPAFDIADEFKDEKDNEDGGKRGENNFLRHLTYVGAKKR
YGEITDSIRERLDFELEVIEKTGYPGYFLIVEDFIREARNMDVSVGSGRGSAAGSVVAYC
LWITNIDPIKYDLLFERFLNPERVSMPDIDIDFDDEGRGRVMDYVINKYGANQVAQIITY
GTMAAKSSIRDTARVLDLPLFEADRIAKLIPGMKLKKIFSLDEKTLKEKLRAEEIELVNE
LKRLSNGNDLMAETINKARILEGSVRNTGIHACGVIITPDDITKFVPVALAKDSDMYVTQ
FDNSVVEDAGLLKMDFLGLKTLTLIKDTVKIVKARHDVLLDPETFPLDDVKTYELFQRGE
TVGIFQYESPGMQKHMRSLKPTVFEDLIAMNALYRPGPMEYIPSFIRRKHGDEEIEYDLP
AMEEYLAETYGITVYQEQVMLLSQKLADFTKGEADVLRKAMGKKQIAVLDKMKPKFVKQA
IANGHDEKKLEKIWTDWEAFASYAFNKSHSTCYAWIAYQTAYLKAHYPAEYMAAVLSNNM
NDIKSVSFFMEECKRAGITVLDPDVNESFSKFSVNKEGAIRFGMAAIKGVGGLAVKAIIN
EREENGHFSSVFDLAKRVDLRVANKKAFEGLILAGGFDSFTNTHRAQYFVEDEKNQKFIE
KALRFGNKYQENQNSSQVSLFGGGSEEEMPEPIIPTCDTWGTMELLGREKEVVGIYISAH
PLDDFKNELKFCNAALSHYNDLPKYEGMALSFGGIVTDVQHRISKAGKGWATFFIEDYSE
NFEFRIFGEEYLRFKHFLVPNSFLFVKTMVKPGWTNKEGLKGEPRVSFNEFLLLHDIMDK
MCKKITIKMPLQEVKENRIKDLQHLFATNRGTQNLHFTIWDTEEKIELNLPSRNTKIKIS
NEFLKLLDEQHINYKLN
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atgtatttaatttttgatactgaaactaccggactacctaaaagttggaatgcgcctatt
actgacactaataattggcctagagcaacacaaattgcttggcaattacatgatgaatta
ggtaatttaattgagcataatgatttccttatcaaacctaacggatttaatattccgtat
gatgcagaaagaattcatggtatttctaccgacttagcacaagaacaagggattgagctt
tctgaaggtttagctttatttaatgaagctttaagtaaaacaaaatttattgttggtcaa
aaccttgctttcgacatcaatattatgggatgtgaattccatcgtttaggtgttgataat
aatttaacagaactaccaatattagatacttgtaccgagcatacagcaaaaatgtgtcag
attcctggtggtcgtggtggtaaatttaaattaccaacattaaccgaattacaccaacat
ttatttggagatggttttggagatgctcacaacgcaactgccgatgtagaagcgacaact
agatgttttttagagttaattcgtttacgtcagtttaccaaagagcaacttcaggttaca
gacgacttttttgatcgttatacccaaaacaatcctagcgttactcaaatcataggctta
aatcacttaaatcttaaaagagaaagtgaaaaaattcgcgctagaaaagaaaaagcaaaa
ggggaaacaacaacaataagcactaatgaaggtttagctgaattaaaaaatagtcagttt
gcacaccttcataaccatacacaatactcggttttacaatctaccatacaaattggcaac
attgtaaaagctgctgcaaaagacaacatgtcggcagttgcaatgaccgacaccggtaat
atgatggctgcttttcattttgtgcaagcagttttaaaccacaacaaagctgttgattcg
gctaatattgaagcaatagaaaaaggggaagaacctacacaaaaacctttaaaaccaatt
gttggctgtgagtttaatatatgtaccgatcatactaataaaagtcaaaaagacaacggt
taccaagttgttttattagctaaaaataaaaaaggatatcacaacttagcaaaaatgtcg
tctattgcttttgttgatggtttttattacatcccaagaattgataaaaaagtagttgaa
caatacaaagaagacattattgtacttacaggtagtttgtacggtgaagtacctagtaaa
atattaaatgttggtgaagcccaagctgaagaagcattgctttggtggaaagaacaattt
ggcgatgatttatatattgaattaatgcgccacaatcaagaagatgaaaaagttgttaat
gaaacacttttaaaattttcaaaaaaacacaacgtaaaaacagttgcatcaaacaacact
ttttatttaagtaaagaagatgcaaatgcacacgatattttattgtgtgtaaaagatgga
gaaaaacaggcaactccaaaaggaagaggtcgtggctatcgttatggtttaccaaacgac
gaatattactttaaatcatccgatgagatgaaaactttatttgccgatcttcctgaagca
atcattaatattcaagaaatcgttgataaaattgagccatacacgttagctcgtgatgta
ctattacctgcttttgatattgctgatgagtttaaagatgaaaaagataatgaagatggt
ggtaaaagaggtgaaaacaattttctaagacatttaacctatgtaggtgccaaaaaacga
tacggcgaaataaccgatagtattcgcgaacgtttagattttgagctagaagtaattgaa
aaaactggatatcctggatacttcttaatcgttgaagattttatccgcgaagcgagaaac
atggatgtttctgtaggatctgggcgtggttctgcagctggatcggtagttgcttattgt
ttatggattaccaatatagacccgattaaatacgatttactttttgagcgtttcttaaat
cccgaacgtgtatcaatgcccgatattgatattgattttgatgatgaagggcgtggtcgt
gtaatggattatgtaattaataaatacggtgccaatcaagtagcacaaattattacttac
ggaaccatggcggcaaaatcttctattagagacactgctcgtgtattagatttaccactt
tttgaagctgatagaattgccaagttgattcctggaatgaagctaaagaaaatattttct
ttggatgaaaaaaccttaaaggaaaaacttcgtgctgaagaaatagaattagtaaacgaa
ctaaaaagactttctaacggaaatgatttaatggctgaaaccattaataaggctagaatt
ttagaaggttctgttcgtaacactggtattcatgcctgtggtgtaattattactcccgac
gatattaccaaattcgtacctgttgcgcttgccaaagattccgacatgtatgtaactcag
ttcgacaactcagtcgttgaagatgctggtttactaaaaatggatttcttaggattaaaa
acgctaaccttaattaaggataccgttaaaattgtaaaagcacgacacgatgtactttta
gatcctgaaacttttccgttagatgatgtaaaaacctatgagcttttccaaagaggagaa
actgttggtatttttcaatatgaatctcccggaatgcaaaaacacatgagatctttaaaa
cctaccgtttttgaagatttaattgccatgaatgccttgtatcgtccgggaccgatggaa
tatatcccttcttttatccgaagaaaacacggagatgaagaaatagagtacgatttacct
gcaatggaagaatatcttgctgaaacctacggaattaccgtataccaagagcaggtaatg
ttattgtcgcaaaaattagctgattttaccaaaggtgaagccgatgtacttcgtaaagcc
atgggtaaaaaacaaattgcggttcttgataaaatgaaaccaaagtttgtaaaacaagca
attgcaaatggtcatgatgaaaaaaagctagaaaaaatttggacggattgggaagccttt
gcttcttatgcttttaacaaatcgcactctacttgctatgcttggattgcttatcaaact
gcgtatttaaaagctcattatcctgctgaatatatggcggcagttctttctaataatatg
aacgacattaaatcggtttcattttttatggaagaatgtaaacgtgccggaattaccgtt
ttagatcctgatgtaaatgaatctttttctaaattttctgtaaataaagaaggagcaatt
cgttttggaatggcagcaattaaaggtgttggtggtcttgccgtaaaagcaattattaat
gaacgtgaagagaatggtcacttttcttctgtttttgatcttgctaaacgagttgattta
cgggtagctaataaaaaagcatttgaaggcttaattttagccggtggtttcgattctttt
acaaatacacacagagcacaatattttgtagaggatgaaaagaatcaaaaatttatagaa
aaagcattgcgttttggtaacaaataccaagaaaatcagaattcttctcaggtttcttta
tttggtggtggttctgaagaagaaatgcctgaaccaattattcctacttgtgatacttgg
ggaaccatggagctattaggaagagaaaaagaagtggtgggaatttatatttctgcgcat
ccgttagatgattttaaaaacgaactgaagttttgtaacgctgcactatctcattataac
gaccttcctaaatacgaaggcatggcattgtcttttggtggtattgtaaccgatgtacaa
catcgtatatctaaagcaggaaaaggatgggctactttttttattgaagattatagtgag
aattttgagtttagaattttcggagaggaataccttaggtttaaacactttttggtacct
aactctttcttgtttgtaaaaacaatggtaaaaccaggatggacaaataaagaaggtcta
aaaggtgaacctagagtaagctttaatgagttcttattacttcatgatattatggataaa
atgtgtaaaaaaataaccataaagatgcctttacaagaagtaaaagaaaacaggattaaa
gatttacagcatttatttgcaactaatagaggtactcaaaacttacattttaccatttgg
gataccgaagaaaaaatagaactgaatttacccagtagaaatactaaaattaaaatttct
aacgagtttttaaaattattagacgagcaacatattaattataaattgaattaa
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