Tenacibaculum retecalamus: PG912_12755
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Entry
PG912_12755 CDS
T08858
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
trt
Tenacibaculum retecalamus
Pathway
trt03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
trt00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PG912_12755
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
trt03019
]
PG912_12755
Enzymes [BR:
trt01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
PG912_12755
Messenger RNA biogenesis [BR:
trt03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
PG912_12755
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UvrD-helicase
P-loop_SecA
AAA_22
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WBX71063
LinkDB
All DBs
Position
complement(2718861..2720171)
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AA seq
436 aa
AA seq
DB search
MTFKSLGLSDALLKAIKEKGYDTPSPIQAKAIPHILDGKDVLASAQTGTGKTAGFTLPVL
QYLSETKHPKYRPVRALVLTPTRELAAQVYDNVREYSTYLDIRSTVVFGGVKAASQIKTL
RQGVDILVATPGRLLDLHDQKAVSFKRIEVLILDEADRMLDMGFVRDINKIISFMPTKRQ
NLLFSATFSKEIKRLAEGILRNPVSVEAAPQNSTADKVSQKAYAVDKGKKTEVVINLIKD
GNWSQVLIFTRTKHGANKLTEKLVKAGVSAAAIHGNKSQGARTKALANFKSNSIRVLVAT
DIAARGIDIPLLPHVINFELPNVPEDYVHRIGRTGRAGAKGEAISLVCSEETEYQKEIEK
ILKQKLKTEVIEGYEPTDTAGPKRAATQKKKSGNGKKKGVGATHRGATEGARKPKRIRPS
DPSRRSDGAPKKNRRR
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
atgacatttaaatctttaggattatctgatgcgttattaaaagccatcaaagaaaaagga
tacgatactccatcaccaatacaagcaaaagcaataccacatattttagacggaaaagat
gtattggcttcagcacaaacaggaactggaaaaaccgctggttttacattacctgtttta
caatatttatcagaaacaaaacacccaaaatacagacctgtaagagctttagttttaaca
ccaactagagaattagcagctcaggtttacgataatgtaagagaatatagtacatattta
gatataagatctaccgtagtttttggaggtgtaaaagcggcaagtcaaataaaaacattg
cgtcaaggcgttgatattttagtagcaacacctggtagattattagatttacacgatcaa
aaagcagtatcatttaaaagaatagaagtacttattttagatgaagcagatagaatgcta
gatatgggttttgttagagatattaacaaaatcatcagttttatgcctacaaagcgtcaa
aacttactgttttctgcaactttttctaaagaaattaaaagattagcagaaggtatttta
agaaatcccgtttctgttgaagctgctccgcaaaactcaactgccgataaagtttctcaa
aaagcttacgcggtagataaaggtaaaaagactgaagttgttattaatttaataaaagat
ggtaattggagtcaggttttaatttttacaagaaccaaacacggagctaataaattaacc
gaaaagttagtaaaagcaggggtttctgctgctgcaattcatggaaataaaagtcaaggt
gcacgtacaaaagcattggcaaactttaaaagtaactctattcgtgttttagtagctact
gatattgctgctcgtggtattgacattccgttattaccacacgttataaattttgaattg
ccaaatgtacctgaagattatgtacatagaattggtagaactggtagagcaggagctaaa
ggggaggctatttctttagtttgtagtgaagaaactgaatatcaaaaagaaatagagaaa
atactaaagcaaaaattaaagaccgaagttattgaaggttatgaacctaccgatactgcg
ggacctaaaagagctgctactcaaaagaaaaaatctggaaacggaaagaaaaaaggggta
ggcgctactcatagaggtgctactgaaggagctaggaagcctaaaagaattcgtcctagc
gatccttcaagaagaagtgacggagctccaaagaaaaatagaagaagataa
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