Takifugu rubripes (torafugu): 101062170
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Entry
101062170 CDS
T02386
Symbol
xab2
Name
(RefSeq) pre-mRNA-splicing factor SYF1
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101062170 (xab2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101062170 (xab2)
03041 Spliceosome [BR:
tru03041
]
101062170 (xab2)
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
101062170 (xab2)
Spliceosome [BR:
tru03041
]
Complex B
Other components
Prp19-related factors
101062170 (xab2)
Complex C
101062170 (xab2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_12
TPR_8
TPR_2
TPR_15
TPR_16
ARM_TT21
ARM_TT21_C
TPR_MalT
NRDE-2
TPR_1
Motif
Other DBs
NCBI-GeneID:
101062170
NCBI-ProteinID:
XP_003964804
Ensembl:
ENSTRUG00000002401
LinkDB
All DBs
Position
5:10073725..10079793
Genome browser
AA seq
848 aa
AA seq
DB search
MPSLNGKPDVIFEDDDLPYEEEIIRNPYSVKCWMRYIEFKQNGQKSILNMIYERALKELP
GSYKLWYNYLRERRKQVKGKCITDPSYEEINNCHERALVFMHKMPRIWLDYCQFLVSQSK
ITRSRQTFDRALRALPVTQHPRIWPLYLRFVRSLSLPETAIRVYRRYLKLCPENAEEYID
YLRSVGRLDEAALRLAAVVNDESFVSKEGKSNYQLWHELCDLISQNPDKVTSLNVGAIIR
GGLTRFTDQLGKLWCSLADYYIRSGHFEKARDVYEEAILTVVTVRDFTQVFDSYAQFEEN
MIAAKMETTAEMGQDEEDDIDLELRLARFEQLIARRPLLLNSVLLRQNPHNVHEWHKRVK
LYDGNPRQIINTYTEAVQTVDPIKATGKPHSLWVSFAKFYEENEQLDDARTIFEKATKVN
YKQVDDLAVVWCEYGEMELRHENYEQALRILRKATAIPSKKAEYFDASEPVQNRVYKSLK
VWSMLADLEESLGTFQSTKAVYDRIIDLRIATPQIIINYAMFLEEHNYFEESFKAYERGI
ALFRWPNVYDIWNTYLTKFIDRYGGKKLERARDLFEQALDGCPAKFAKTIYLLYAKLEEN
YGLARHAMAVYERATEAVEVEERHHMFNIYIKRAAEIYGVTYTREIYQKAIEVLPDEHAR
DMCLRFSDMESKLGEIDRARAIYSYCSQICDPRVTANFWQTWKEFEIRHGNEDTIREMLR
IKRSIQATYNTQVNFMSSQMLKATTSSTGTVSDLAPGQMGMDDMKMLEQKAQQLAAEAEK
DKPKPKEKILFVRSDTSRSELAELSKQANPDEIDIDDDEEDDNDQGPEEVQLEQKSVPTA
VFGGLKDD
NT seq
2547 nt
NT seq
+upstream
nt +downstream
nt
atgccttctctgaacggaaaacccgatgttatatttgaagatgacgatcttccttatgag
gaagagataatcaggaacccatattcagtcaagtgttggatgcgttacatcgaatttaaa
caaaatgggcaaaaatccatcctcaacatgatatatgagagggctctgaaagagctacct
ggaagctacaagttgtggtataattatctcagagagagacggaaacaagtgaaagggaaa
tgtataacagaccccagctatgaagagatcaataattgccatgaaagggccttggtgttt
atgcacaagatgcctagaatatggctagattactgccagttccttgtgtctcagagtaag
ataacaagaagtcgccaaacatttgaccgtgccctcagagctcttcctgttactcagcac
ccacgcatctggcctctgtacctccgctttgtccgcagtctttccctgcccgagactgcc
attcgggtatatcgcagataccttaagctttgccctgagaatgccgaggaatacatagat
tacttacggtctgttggccgcctggatgaagctgctctccgtctagcagctgtagttaat
gatgaaagctttgtgtcaaaagaaggaaaatcaaattatcaattgtggcatgaactctgt
gacctgatctctcaaaatccagataaggtgacctctttaaatgtaggtgccatcatcaga
ggtggcctcactcggttcacagaccaacttggaaaactctggtgttctttggcagactat
tatatccggagtggtcattttgaaaaggcccgtgatgtgtatgaggaggccattcttaca
gtggtaacagtaagagactttacacaagtgtttgatagttatgcccagtttgaggaaaac
atgattgcggcaaagatggaaaccactgccgaaatggggcaggatgaagaagatgacata
gacttggagcttagactggctcgctttgagcagttgatagcccgtcgcccccttctgttg
aacagtgtgttgctgcggcagaaccctcacaatgttcacgagtggcataagcgagtgaaa
ctatatgacggtaatccgcgacagatcatcaacacatacactgaggcagtacagactgtg
gatccaatcaaggccactggaaagcctcactccctttgggtttcctttgctaaattctat
gaagaaaatgagcagcttgatgatgctcggacaatctttgaaaaggctaccaaagtgaac
tataagcaggtggatgaccttgcagtggtttggtgtgaatatggggagatggaactgcgc
catgagaactatgaacaggcattacgcatactcaggaaagcgacggccatcccatctaag
aaagcagagtactttgatgcatctgagcctgtccaaaacagagtctacaagtccctgaaa
gtttggtctatgctggcagatttggaggaaagtcttgggacattccagtcaacaaaagca
gtatatgaccgaattattgacctccgcatcgccactccacaaatcatcatcaattatgct
atgttccttgaagaacacaactactttgaggaaagcttcaaagcatacgagcgtggtatt
gctctgttcaggtggccaaatgtttatgatatctggaacacttatcttaccaagttcatt
gaccgctatggtggcaaaaagctggagagagcaagggatttatttgaacaagctctggat
ggttgccctgccaagtttgcaaaaactatttatttgctgtatgcaaaactggaggagaat
tatgggctggctcgacatgctatggctgtctatgaaagagcaactgaggcagtagaagta
gaagagcgacaccacatgttcaatatctacatcaagagagcagctgaaatatatggagtc
acatacaccagagaaatttatcagaaagctattgaggttcttcctgatgagcacgcacgg
gacatgtgtctgcgattttctgacatggagagtaagctgggtgaaattgatcgagccaga
gcaatctactcctactgctcacaaatctgtgaccctagggtgacagctaatttctggcag
acctggaaagaatttgagatccgtcatggaaatgaggacactattcgtgagatgctgaga
atcaaacgcagtatccaggccacatacaacacccaggtcaactttatgtcatctcagatg
ctgaaggccacaacaagctccacaggaacggtgtcagatcttgctccaggccaaatggga
atggatgacatgaagatgttggagcagaaagctcagcagctggctgcagaagctgagaag
gacaaaccgaaacccaaagagaagattctctttgtcaggagtgatacctctcgcagtgaa
cttgctgagctctcaaaacaagctaaccccgatgagatcgacatcgacgacgatgaagag
gacgacaatgaccagggcccagaggaggtgcagcttgaacagaagagtgtccccacagct
gtctttggagggcttaaggatgattga
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