Takifugu rubripes (torafugu): 101063405
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Entry
101063405 CDS
T02386
Name
(RefSeq) ATP-dependent RNA helicase DHX8 isoform X1
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
101063405
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tru03041
]
101063405
Enzymes [BR:
tru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
101063405
Spliceosome [BR:
tru03041
]
Complex C
Other components
Step II factors
101063405
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
HA2_N
DEAD
AAA_22
AAA_19
nSTAND3
GIPC1_GH2
T2SSE
AAA_16
Flavi_DEAD
TsaE
PhoH
Sigma54_activ_2
ABC_tran
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
101063405
NCBI-ProteinID:
XP_029701023
LinkDB
All DBs
Position
1:complement(207317..220447)
Genome browser
AA seq
1206 aa
AA seq
DB search
MMADISVDELQQLEYLSLVSKVCTELDNHLGLNDKDLAEFVIHLAEKQPTFDGFKALLIQ
NGAEFTDSLISNLLRLIQTMRPPTKAGTSPASEASVQPKTRKEKLKEMFPALCRANDPAP
EKLLDEDDVKVAADAMKELEMFLPSVSGTDPKTSRSSRSEKSRRCSRSRSRSRERDRHRD
RDREKDRKRTRRSRSRSRDRERCRERERGKRRDKSSRWSERSPSPRRERDPDRWKDKHVE
RPPPEEPSVGDIYCGKVTSIMQFGCFVQLEGLRKRWEGLVHISELRREGRVANVADVVRK
GQRVKVKVLSFTGSKTSLSMKDVDQETGEDLNPNRRRNVGPDGSEEVSMRNPDRPSNLNL
GHGPEVEQDDTLERKRLTKISDPEKWEIKQMIAANVLSKEEFPDFDDETGILPKVDDEED
EDLEIELVEEEPPFLRGHTKQSMDMSPVKIVKNPDGSLSQAAMMQSALAKERRELKQAAR
EAEMDSIPMGLNKHWVDPLPDTDGRQIAANMRGIGMMPNDMPEWKKHAFGGNKASYGKKT
QLSILEQRESLPIYKLKEQLVQAVHENQILIVIGETGSGKTTQITQYLAEAGYTSRGKIG
CTQPRRVAAMSVAKRVSEEYGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDS
ELGQYAIIMLDEAHERTIHTDVLFGLLKKTVQKRTDMKLIVTSATLDAVKFSQYFYEAPI
FTIPGRTYPVEVLYTKEPETDYLDASLITVMQIHLTEPPGDILVFLTGQEEIDTACEILY
ERMKSLGPDVPELIILPVYSALPSEMQTRIFDPAPPGSRKVVIATNIAETSLTIDGIYYV
VDPGFVKQKVYNSKTGIDQLVVTPISQAQAKQRAGRAGRTGPGKCYRLYTERAYRDEMLT
TNVPEIQRTNLASTVLSLKAMGINDLLSFDFMDAPPMETLITAMEQLYTLGALDDEGLLT
RLGRRMAEFPLEPMLCKMLIMSVHLGCSEEMLTIVSMLSVQNVFYRPKDKQALADQKKAK
FHQPEGDHLTLLAVYNSWKNNKFSNPWCYENFIQARSLRRAQDIRKQMLGIMDRHKLDVV
SCGKATVRVQKAICSGFFRNAAKKDPQEGYRTLIDQQVVYIHPSSALFNRQPEWVVYHEL
VLTTKEYMREVTTIDPRWLVEFAPAFFKVSDPTRLSKQKKQQRLEPLYNRYEEPNAWRIS
RAFRRR
NT seq
3621 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggacatcagcgttgatgagctgcagcagctggagtatctttctctggtgtct
aaagtctgcacggagttggacaaccatctgggccttaatgacaaagacctcgctgaattt
gtgatccaccttgctgaaaaacaaccgacatttgacggattcaaagctctgttgatccaa
aatggagccgaattcacggattctctcatcagtaatctgctgcgactcatccagaccatg
cggcctccaaccaaagccgggaccagtccagcttcggaggcttcagtccagcccaagacc
agaaaggagaagttgaaggagatgtttcctgctctgtgtcgtgcaaatgatccagcccct
gaaaaacttttagatgaagatgatgtgaaagtagcagctgatgccatgaaagagctggag
atgtttctgcccagtgtcagcgggacagaccccaaaaccagcaggagcagcaggtctgag
aagagcagacgttgcagtcggagtcgcagcagaagccgagagagagaccgacacagagac
cgagatcgggagaaggacaggaagaggactcgccggtcccggtcccgctccagagaccgg
gagcggtgcagggagcgagagcgcggcaaaaggagggacaagtcttcccgctggagcgag
cgctctccgagccccaggagggagcgggaccctgatcggtggaaggacaaacacgtggag
cgcccccccccggaggagccctccgtgggggacatctactgtgggaaggtcaccagcatc
atgcagtttggctgctttgtccagctggaggggctacggaaacggtgggagggcctggtc
cacatctccgagctccgccgagagggccgtgtagcaaacgtggccgacgtggtccgcaaa
ggccaacgggtcaaggtcaaggttctgtccttcacaggttccaagaccagcctcagtatg
aaggatgtggaccaggagaccggagaagacctgaatcccaacaggaggaggaatgttggc
ccggacggaagtgaggaagtctccatgaggaaccctgatcggcccagcaacctgaacctg
ggccacggccccgaggtggagcaggacgacacactggagcgaaagaggctgaccaagatc
tccgacccagagaagtgggagatcaagcagatgatcgctgccaacgtcctgtccaaggaa
gagttccccgattttgatgatgagactgggattctccctaaagtggacgatgaggaggat
gaggatctggaaattgagctggtggaagaagagccgccgttcctgaggggacacaccaag
cagagcatggacatgagtcctgtcaagatcgtcaagaatcccgatggctccctgtctcag
gccgccatgatgcagagcgccctcgccaaggagagacgggagctgaagcaggcggcccgc
gaggccgagatggactccatccccatgggactgaacaagcactgggtggacccgctgccg
gacactgacgggaggcagattgctgccaacatgagggggatcggaatgatgcccaacgac
atgccggagtggaagaaacacgcgtttgggggcaacaaggcctcgtatgggaagaagacc
cagctgtccatcctggagcagcgggagagcctgcccatctacaagctgaaggagcagctc
gtgcaggccgtccacgagaaccagatcctgattgttatcggtgagacgggctccgggaag
accacgcagatcacccagtacctggccgaggccggctacaccagcagggggaagatcggc
tgcacccagcccagacgtgtggccgccatgtctgtggccaagagggtgtctgaggagtac
ggctgctgtctgggtcaggaggtgggctacaccatccgctttgaggactgcaccagccca
gaaaccgtcatcaagtacatgacagacggaatgctgctgcgcgagtgtctgatcgactcg
gaactgggtcagtacgccatcatcatgctggacgaggcccacgagaggaccatccacacc
gacgtgctcttcgggctgctgaagaagaccgttcagaaacggaccgacatgaagctgatc
gtgacctcggccacgctggacgccgtcaagttctctcagtacttctacgaggcgcccatc
ttcaccatcccaggaagaacctacccagtggaggtgctctacaccaaagagcctgagacc
gactacctggacgccagtctgatcacagtcatgcagatccacctgacggaacctccaggc
gacatcctggtgttcctgaccggacaggaagagatcgacaccgcctgtgagatcctgtac
gagcgcatgaagtcgctggggcccgacgttcccgagctcatcatcctcccggtttattcc
gccctccccagcgagatgcagaccagaatcttcgacccggcgccgcccggcagcagaaag
gtggtcatcgccaccaacatcgccgagacctctctgaccatagacgggatctattacgtg
gtggatcccgggttcgtgaagcagaaagtctacaactccaagacgggcatcgaccagctg
gtggtgacgcccatctcccaggctcaggccaagcagagggcgggccgagctggcagaacc
ggacccgggaagtgttaccggctgtacaccgagagggcctacagagacgagatgttgacc
accaacgtgccggagatccagaggaccaacctggcgagcacggtgctgtctctgaaggcc
atgggcatcaacgacctgctgtccttcgacttcatggacgctcctcccatggagacgctg
atcacggccatggagcagctctacacgctgggagcgctggacgacgaggggctgctcacc
cggttggggaggaggatggccgagttccccctggagcccatgctgtgtaagatgctgatc
atgtccgtccacctgggctgcagcgaggagatgctgaccatcgtctccatgctgtcggtg
cagaacgtcttctacaggcccaaagacaagcaggctttggctgaccaaaagaaggcaaag
ttccaccagccggagggagaccatctgaccctgttggcagtttacaactcctggaagaac
aacaagttctccaacccctggtgctacgagaacttcatccaggctcgctcccttcgcaga
gcccaggacatccgcaaacagatgctgggaatcatggacaggcacaagcttgacgtggtg
tcctgtggcaaagcaacagtccgggtccagaaagccatctgcagtggtttcttcaggaac
gcagccaagaaggatcctcaggaaggctaccgcaccctgatcgaccagcaggtggtctac
atccacccctccagtgctctgttcaaccgccagccggagtgggtcgtctaccatgagctg
gtgctgaccaccaaggaatacatgcgggaggtgaccaccatcgacccccgctggctggtg
gagttcgcgcctgcgttctttaaggtgtccgaccccactcgcctcagcaagcagaagaag
cagcagcgcctggagcctctgtacaaccgctacgaggagcccaacgcctggaggatctcg
cgcgccttcagacgccgttga
DBGET
integrated database retrieval system
