Takifugu rubripes (torafugu): 101063956
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Entry
101063956 CDS
T02386
Symbol
col25a1
Name
(RefSeq) collagen alpha-1(XXV) chain isoform X1
KO
K24356
collagen type XXV alpha
Organism
tru
Takifugu rubripes (torafugu)
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
101063956 (col25a1)
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101063956 (col25a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101063956
NCBI-ProteinID:
XP_029695860
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Position
8:complement(18999892..19023475)
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AA seq
586 aa
AA seq
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MDPEVSPVCRGTRVSRENRDSRGQRGRRGRRVPLDLRGLRVLRDRRVKWGERGEKGDVGE
DGARGEKGDKGDAGSSAAGIKGEPGAPGRSGQKGEPGLPGLPGLPGIKGEPGFLGPQGEP
GLPGLPGLKGERGEHGPPGRGEQGEPGPAGPKGSEGEAGTPGPKGSKGDSGDKGDSGGVG
PGGPPGEKGEPGATEIIDYNGNIQEALQKIATLTVTGPPGPPGPMGPPGFKGERGMPGLP
GLDGERGYKGSKGDMGMPGSSGEKGATGLPGLPGINAVKGDKGDPGLPGPQGSSISGPPG
PPGAHGPPGPMGPHGIPGPKGEPGLHGVKGVRGEAGHKGDRGPMGLPGASGLDGKPGIRG
VDGPPGPAGPAGPKGDVGEKGGQGDPGPRGPYGLPGGPGKPGLDGLPGATGEKGDVGERG
EKGEKGKKGKKGPKGEKGEQGAPGLDAPCPLGFRGFKGEKGGTRAARSGRAGCPMASWVR
TGCRCPAAGRRESRRGWWPETRPQLALSLLYCWRSRSAGGRRRSCIALVGASGHVGGVTA
VLTGAGFEAEPTRLLEGGAYAGSGRGFWLSGWAGFTMPSRFLYFQF
NT seq
1761 nt
NT seq
+upstream
nt +downstream
nt
atggacccagaggtgtccccggtctgccgggggacccgggtcagccgggagaaccgggac
tcacggggccagaggggcaggaggggcagaagggttccactggacttgcgggggctccgg
gtgctgagggacagaagggtgaaatggggagagcggggtgaaaagggcgacgtcggcgag
gacggagcgagaggagaaaagggcgacaaaggagatgcaggttcttcagcagcaggcatc
aagggtgaaccgggagcgcctggacggagcggacagaagggagagccaggactcccaggg
ctgcctggactgccagggataaagggtgagcccggattcctcggccctcagggagaaccg
ggactccccggactgccgggactgaagggggaacgaggggaacacggccccccggggaga
ggagagcaaggagagcccggaccggctgggccaaaggggtccgagggggaggccgggacg
cctggtcccaaagggtcaaagggagactccggagacaaaggagattctggaggtgtcggt
ccggggggcccccccggagagaagggagagccaggagccacggagatcatcgactacaac
ggcaacatccaggaagctctccagaagatcgccaccctgacagtgacgggtcctcctgga
cctccgggcccgatgggacctccaggctttaagggggagcgcgggatgcccgggctgccc
ggactggatggtgaaaggggctacaaaggctccaaaggggacatgggaatgccgggatcc
tcgggagagaagggagcgacgggtcttcccggcctgcctggcatcaatgcagtcaaagga
gacaagggggatccggggctgcctggtcctcagggatcttcgatcagtggacctccagga
ccaccgggggcacatggacctccaggacccatgggtccacacgggattcctggtccgaag
ggcgaacccggtctgcacggcgtgaagggggtccgaggggaggcggggcataagggggac
cgcggacccatgggcctccctggagcctccggcttggacggcaagcccggaattaggggg
gtggacggtcctccgggcccggccggtcccgccggacccaaaggcgacgtcggtgaaaaa
ggaggtcaaggagatccgggaccgaggggaccgtacggactgcctggaggtcctggaaaa
cctgggctggacggtttaccgggcgcaacgggagagaagggcgacgttggggagagagga
gagaagggggagaagggaaagaagggcaaaaaagggcctaagggcgagaaaggagaacag
ggtgcccctggattagatgcaccctgcccattgggtttccggggatttaagggtgaaaag
gggggaaccagggcagccaggtctggacgggctggatgccccatggccagttgggtccgg
acgggttgccgatgcccggctgctggcagaagggagtcacgccgtggttggtggcctgag
acgcgcccacagctagcgctgtcgttgctttattgttggcgatcccgctctgctggtggg
cgtcgccgttcatgcatcgccctggttggtgcctccggacacgtgggcggggtcacagct
gtactgaccggggctggatttgaggcggaaccgacccgcctccttgagggcggagcatat
gctggaagtgggcggggcttttggctctcaggatgggcggggttcacgatgccgtcacgt
tttctttattttcagttctga
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