Takifugu rubripes (torafugu): 101064659
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Entry
101064659 CDS
T02386
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X2
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03013
Nucleocytoplasmic transport
tru03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
101064659
03015 mRNA surveillance pathway
101064659
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101064659
Enzymes [BR:
tru01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
101064659
5.6.2.5 RNA 5'-3' helicase
101064659
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
101064659
mRNA cycle factors
Common to processing body (P body) and stress granule
101064659
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
101064659
NCBI-ProteinID:
XP_003975714
Ensembl:
ENSTRUG00000000150
UniProt:
H2RJJ5
LinkDB
All DBs
Position
22:complement(11179815..11189700)
Genome browser
AA seq
1111 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDIEETELLGADTQGSEYDFTDFTLPSQTQTQGQSQLENQVNGPD
IVLQNGEDAVVKASQLLAELNFEEDEEDAYYTKDLPAHACSYCGIHDPACVVYCNTSKKW
FCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKADS
VVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQIN
KLEELWKENPCASLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLKES
QTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVIKV
PDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYIYH
KLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVTSA
TIVYHLARQGSGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLALHN
QTRNMESMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAGDP
RLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLSQS
LFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQPD
KPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRSYL
VQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNVAL
TRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVNTI
NPGGRFMSTAMYDAREALIPGSVYDRSNNGRTTNMYFQTHDQIGMIGTGPNPITAMNLPI
PFNLVMPPIPPPGYLGQINGPASGRGGGMKGKAATGAGGGSRGGRQRNRGNMGSGGNSGS
DRGLHGGHMGVSQASQDLGSQPFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGDE
FKSQIDVALSQDSTYQGERAYHGGVTGLSQY
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacggcccgagctcacaaactctaacgttcctcgacatcgaggaa
accgagcttttgggtgccgatacacagggctccgagtacgacttcaccgattttacccta
ccaagccagacccagactcaaggacagagtcagctagagaaccaggttaatggccccgac
atcgttttgcagaatggagaagacgccgtggttaaagccagccagctgttggcagaacta
aactttgaggaagatgaggaggacgcctattacaccaaggatcttcctgcgcatgcctgc
agctactgtggaattcatgatccagcttgtgtggtttactgtaacacaagcaagaaatgg
ttctgtaatggccgtggaaacacatctggcagccatattgtgaaccatctggtgagagcc
aagtcaaaagaggtaaccctgcataaggatggccctctgggagaaacagtgttggagtgc
tacaactgcggctgtcgtaatgtcttcctcctgggtttcattcccgccaaagctgactct
gtagtggtgctactgtgcagacagccctgtgctagccagagcagtttgaaggacatcaac
tgggacagctcacaatggcagcctctcatccaggaccgctgcttcctgtcctggctggtg
aaaatcccatcggagcaggagcagctgcgagctcgtcagatcaccgcccagcagatcaac
aagctggaggaactctggaaggaaaatccctgtgcatctttggaggacttggaaaaacct
ggagtggatgaggagccccagcatgtcctgctcagatatgaggatgcctaccagtaccag
aacatctttggtcctctagtgaagctggaggctgactatgataagaaactgaaggagtct
cagactcaggacaacataacagtcagatgggacttgggactgaacaaaaaaaggatcgct
tatttcactcttcctaaaactgactcggatatgaggttgatgcagggagatgaaatttgc
ctgagatataaaggagacctggctcctccctggaaaggaattggacacgtcatcaaagtc
cctgataactatggtgatgagattgccatagaactaaggagcagtgcaggggctccagtt
gagatcccacacaactttcaggtggattttgtgtggaagtcgacttcttttgataggatg
caaagtgcccttaagacatttgctgtggatgagacttcagtgtctggttatatttaccac
aaactgttggggcacgaggttgaggacgtggttatcaagtgccagctgcctaaacgcttc
acagcccagggcctgcccgacctcaaccactcacaggtgtacgctgtgaagacagtgctg
cagcgtcccctcagcctgatccaaggtccacctgggacgggaaagaccgtgacctctgcg
accatcgtctatcacctggctcgacaaggcagcggtccagtgctagtgtgtgctcccagt
aacatcgccgttgatcaactgacagagaagatccaccagactggtctgaaggtggtaagg
ctgtgtgccaagagcagggaagccatcgactcccccgtgtccttcctggctttacacaac
cagacccgtaacatggagagtatgccagaactccagaagctccaacagctgaaagatgag
actggggaactttcgtcgtcggacgagaagcgatacagagctctgagacgcactgccgag
agggaactgcttatgaatgcagatgtgatctgctgcacctgcgtcggggcgggagatcct
cgcctggccaagatgcagttccgatccatcctgatcgatgaaagcacccaggctacagaa
ccagagtgtatggtgcctgtcgttcttggtgccaaacagttaatcctggtgggagatcac
tgtcagctggggcctgtggtgatgtgtaagaaggcagctaaagcaggcctgtcccagtcg
ctttttgagcgcctggtggttttgggtatccggccaatccgtctgcaggtccagtaccgt
atgcacccggccctcagcgccttcccctccaacatcttctatgaggggtccttgcagaac
ggagtcactgccgcggaccgtgtgaaaaaagggttcgatttccagtggccacagcctgac
aaaccaatgttcttttatgtgacccaaggccaagaagaaatcgccagctctggaacatca
tatctcaacaggactgaggcagccaatgtggagaaaataaccacgaggctgctgaaagct
ggagcgaaacctgatcagatcggtatcattacaccctatgagggccagcggtcgtatctg
gtccagtacatgcagttcagtgggtcgcttcatacaaaactgtatcaggaggtggaaatt
gccagcgtggatgcctttcagggcagagagaaggactttatcatcctgtcttgtgtgagg
gccaacgagcatcagggcatcggtttcctgaacgatccccgacgtctcaatgttgcgctg
actcgcgcaaggtatggtgtgatcattgtgggaaaccccaaggccctgtccaagcagcct
ctctggaatcaccttttgaactactacaaggagcagaaggtcctggtggaaggtcctctc
aacaacctgcgggagagcctcatgcagttcagcaagccccgaaaactggtcaacaccatc
aatcctggagggcgattcatgagcacggccatgtatgatgccagagaagccctcattcct
gggtctgtttatgaccggagcaacaacgggcgtacaaccaatatgtatttccagacccat
gaccagatcggtatgattggaactggccctaatccaataacggcaatgaacctccccata
ccctttaaccttgtgatgcccccgatccctccgcctggatacctggggcagatcaatgga
cccgcatcaggtcgcggtggaggtatgaaggggaaggccgccaccggagcaggcggaggg
tctcgcggcggccgccaaagaaaccgcggcaacatggggagcggaggaaattcaggatca
gaccgcggactgcacggaggtcacatgggtgtcagccaggcaagccaggatctgggatct
cagcccttctcccagggtcccctgacgcaaggctacatcaacatgagccagccgtcacag
atgagccagccagggctctcgcagcctgaactctcacaggacagttaccttggagatgag
ttcaagtcccagattgatgtggctttgtcccaggactccacctaccagggggagcgggct
taccatggcggtgtgactggtctgtcccagtactag
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integrated database retrieval system
