Takifugu rubripes (torafugu): 101066329
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Entry
101066329 CDS
T02386
Name
(RefSeq) collagen alpha-1(XVII) chain-like isoform X1
KO
K07603
collagen type XVII alpha
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04382
Cornified envelope formation
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
101066329
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
101066329
NCBI-ProteinID:
XP_029690949
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All DBs
Position
4:complement(10736605..10753541)
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AA seq
1815 aa
AA seq
DB search
MDDLTRQMDISGGKSEEKVVRETITSTTILTSLPPKGTGGSTQRNMSGSVGGLGLEKNVF
TQNSNGTYFSSSSVGVSSSYSSSGVYLGEDSSGGGEVGLRYGEGYGSGSGSGGGGGGGGG
SGSYVVSSVSKVRSSSSGGARRAQGAGSSGGVSPGFRERKVVSSRSGGYDGSSSANSSPE
FTRKDYGIYCSSTTRGRSESRESEIRARLQSASPSASRWTELDDVKKLLKGRSSSVSPTR
SSNASITVPVPKKATVETQTISVAAQSGMSFDSGAISNGFNTIDSGLYDNALLSGQVDAG
ARSGQYDVTMKSGQYQTTLQSSQFGGSLASGQFDSGVKSAQYDTSLKSAQYDTSLKSAQY
DTGARSAQYDTGARSAQYDTGARSGHYDTGARSGHYDLSYKSAQYGSGVRAGQYDTLDGV
LPAFTWSTTTLPSASTTAVAGNTSTYTYQASSNNAAGGSSPVSLTLPSSLSVYGFQNNLA
PASGSVLTTSGANANANVGGYGVPKNMSYGTGVASTGLSTTTRSQIDDVYKRDQKILMSD
KENVSGKRETETLILAKDSGKQFTSGGSSVHLRGGSVSGDSMKEKLLTNYGETMKLKADT
GNSYYGSSGVVMKDKATFAEIHRDSGIFGGGGLCCCSDACCSWWKWLLGLLLLLLLLLGL
LFGLIALAEDVRKLKNRVAGLEAESSVAAARLSRLSGSSTHINTHVGGTSHTDHNVHLGA
GGGASGTHIGITTGSNGGRGTDVLVGGGAGGASGGGAGGAGTSLSGGTSSSSSSSASGGT
SHSGSAGTSFGGGAGTGHSGGAGTSYGGGAGTRFGGGEGTSTSYSSGTSLSSGSGGAAGT
TFTGVTGYGTGESGGRTDLVALQVLIQHTLRAEMESEAFRAFLATSLPGQRGLPGPKGDT
GAKGDTGFPGPPGVRGYAGSDGPKGQKGNQGDHGLDGQPGLRGREGPPGPRGEPGPSGVG
QKGAPGDHGVPGPKGAPGVPGSPGQPGSQGFRGEPGSPGAKGDRGDEGHRGPKGDVGLPG
LQGPAGEKGTKGSMGYSGVDGTKGSRGDQGPAGPPGLRGPAGSPGDPGVPGSPGLQGPPG
IAGSPGRPGAKGEMGEAGRIINAAGLSTVGVPGPPGPAGPPGPAGAPGLSGPIGPAGLPG
PAGAKGERGEPGITVRTSERISSTRAEGQLSSGGVSALPGPPGPPGPPGRPGDSRQGPPG
PPGPPGYGRPGPKGDKGDPGFSSSSGTFYTGPPGPPGPAGPKGSSGSPGPRGYPGDPGQP
GRPGTSERIATYSGGNGIPGPPGPPGPQGPPGPQGFKGDPGVPGISASSRGSISVASGPP
GPPGPPGPAGRPGTFASSTEMHQYISEYISRNRVVGSPGPPGPPGPPGIPGTFSGSLEDI
STRIIAYIQRSGSSLSIGVQGPPGPPGPPGPGSFTVNALIAMLQREDVRRYLSGPPGPQG
PPGPPGTSVGISASYSVDEIATYVFNIMNSRGIARGPPGPPGPPGPSGPSGAGGAGFTTA
TIDYYALSRNPEFRSWISSTTQQGPPGPPGVPGQAGPPGPQGPPGVSATVYGAGSRGYSL
EDIQRYLQSSGFRGVPGQPGPQGPPGPQGPPGSYSATLAFPREKIRAEVQDYLFSDNVRR
TFIGPPGPPGPRGQRGERGEPGYLHSEAQSLASHRSSERRETNLSRIYETMDYSTVARRV
TDYIRSQGMLQENQGDGHLKTYLRVHQGPPGPPGPPGPPGYSRVIGSYGNVTADLMDFFR
THGTIPGPPGGPGPRGERGHPGPKGDKGDQGQPGLPGLPGSYTVQIPHRVQKRHAAADSE
AGGRSKKHLRRTSGG
NT seq
5448 nt
NT seq
+upstream
nt +downstream
nt
atggacgacttaacgagacagatggacatctcaggaggcaagtcagaggaaaaggttgtg
agggaaacgataacctccacgaccatcctgacgtctctgccgccaaagggaaccggagga
tccactcagcggaatatgtccggcagtgtgggagggctgggactggagaagaatgtcttc
acgcagaacagcaatggaacgtatttctcttcatcctccgtaggtgtgagcagcagctac
agctcctcgggggtgtacctgggagaggactcctctggagggggcgaggtgggcctgagg
tatggcgaagggtacggaagcgggagcgggagcggcggtggcggcggcggcggcggcggc
agcgggagctacgtggtgagctccgtgtcaaaggtcaggtccagctcctcgggaggggcc
aggagggcgcagggtgccggctcatcgggaggggtgtcgccaggtttccgggagaggaag
gttgtgtcgagccgctcgggaggttacgatggaagttctagtgctaattcctctcctgaa
tttacacgcaaagattatggaatctattgctccagcaccacaagagggaggagtgaaagc
agagagagtgagatcagggccagactgcagagtgcctccccgtcagccagcagatggact
gagctggatgacgtgaagaagctgctgaagggtcgctccagcagcgtgagccccactcgc
tcctccaacgcctccatcaccgtgcccgtccccaagaaggccaccgtggaaacccagacc
atctctgtggccgctcagtcgggtatgtcctttgactctggtgccatatcaaacggcttc
aacaccatcgattcgggcctgtacgacaacgcgctgctctctggccaggtggacgctggt
gcgaggtcaggacagtatgacgtcaccatgaaatcaggccagtatcagactacactgcag
tccagccagtttgggggcagtttggcgtccggccagttcgattctggtgtaaaatcagcc
cagtatgacaccagtctgaaatcagcccagtatgacaccagtctgaaatcagcccagtat
gacactggtgccaggtcagcccagtatgacactggtgccaggtcagcccagtatgacact
ggtgccaggtcaggccactatgacactggtgccaggtcaggccactatgatttgagctac
aaatcagcccagtatggcagcggcgtgagagcgggccagtatgacacactggacggcgta
cttcctgctttcacttggtccaccaccaccctgccctccgcttccaccacagcggtcgcc
ggcaacaccagcacgtacacctaccaggccagcagcaacaacgcggccggaggatcctca
ccagtcagcctcacgctgccctcgtccctgtcagtttatggcttccagaacaatctggct
cccgcctctggcagcgtgctcaccaccagtggagctaacgccaatgctaacgtaggcggt
tacggcgttccgaagaacatgtcatatggcaccggcgtcgcaagcactggactatctaca
accactagatcccaaatcgatgacgtttataagagagaccagaaaatcctgatgtcagac
aaggaaaacgtgtctggcaagcgggagactgaaacactgattctggcgaaagacagcggc
aagcagttcaccagcggcggcagcagcgtgcacttgagaggagggtcggtgtcaggagat
tcaatgaaagagaagctcttaacaaactacggagagaccatgaagctgaaggcagacact
ggcaactcttactatggatcatctggagtcgtcatgaaagacaaagccacttttgctgag
atccacagggacagcgggatcttcgggggcggggggctgtgctgctgctccgacgcctgc
tgctcctggtggaagtggctgctgggcctcctcctcctcctgctgctcctgctgggactc
ctgtttgggctcatcgccctggccgaggacgtgaggaagctgaagaaccgagtggccggc
ctggaggccgagtcctcggtcgccgccgctcgcctcagtcgtctgtccggttcttccact
cacatcaacacgcacgtgggaggaaccagccacactgaccacaacgtgcacctgggagca
ggaggcggggcctcaggcacacacataggaattaccactggctccaacggtggccgtggg
accgatgtcctggttggaggcggggctggaggcgccagtggaggcggggctggaggcgct
ggtaccagcttgagtggcggcaccagcagttcaagttccagctccgcatctggtggtacc
agccattcaggaagtgctggtaccagtttcggtggaggtgctggtaccggtcacagtgga
ggtgctggtaccagttatggtggaggtgccggtaccaggttcggaggaggcgagggaacc
agcaccagttacagttctggcaccagcctcagcagcggtagtggtggagccgctggtacc
acctttactggtgtcactgggtacggaactggggagagtggaggacgcacggacctggtg
gctctgcaggtgctcatccagcacacgctgagagcagaaatggagtcagaggccttcaga
gcttttctagccacctccctgccgggccagaggggactgcctggaccaaaaggcgacact
ggagctaaaggagatactggcttccctggacctccaggggtgcggggatatgcaggctct
gacggtccaaagggacagaaaggaaatcaaggtgatcatggactggacggacaaccaggt
ctcaggggccgcgaggggccccctggacccagaggcgagccaggaccttcaggcgtcgga
cagaaaggtgctcctggagatcatggagttcctggtccaaaaggtgcacctggagttcct
ggatcacctggtcagccgggctcacaaggattccgtggcgagccgggctcacctggcgct
aaaggtgaccgtggcgatgaaggtcacagaggtccgaagggtgatgttggtttacctggt
ctgcaagggccggcaggagaaaagggaaccaaaggatcgatgggttattctggagttgat
ggcaccaaaggatcaagaggtgaccagggacctgccggccctcccggactgagaggccct
gctggatcccctggagaccctggagttccaggatcacctgggcttcaaggaccaccagga
attgcaggaagtccgggaagacctggcgccaaaggagaaatgggtgaagcaggaagaatc
atcaatgcagctggattgtctactgttggagtcccaggaccacctggaccggctggtcct
ccaggccctgcaggagctccaggattatcaggtcccattggccccgctggtcttcctggt
cctgctggtgctaaaggtgaacgaggagaaccgggaataaccgtgagaacgtctgaaaga
atcagttcaaccagagcagagggacaactttcttctggtggagtttcagcattacctggc
ccacctgggccacccggccctcctggacgtccaggtgattcaagacaaggaccaccggga
ccacctggacctccaggctatggaagaccaggacctaaaggagacaaaggagacccaggc
ttctcatccagctctggaacattttacacggggccacctggaccaccaggacctgctggt
ccaaaaggctcatcaggttctcctggaccaagaggatatccaggtgatccaggccaacca
ggaagaccaggaacctcagagagaattgcaacttatagtggaggaaacgggattccagga
ccacctggtccaccaggacctcaaggacctccaggaccacaaggatttaaaggggatcct
ggagttcctggaatctctgcttcttcaagaggctccatctcagtcgcctcagggcctcct
ggtcccccaggtccacctggtcctgcaggccggccgggcacttttgcttcttctactgag
atgcaccagtacatctctgaatatataagtagaaacagagtggttggatctcctggacct
ccaggtcctcctgggcctccaggaatccccggaaccttctcagggtctttggaggacatc
tcgaccagaattattgcgtacatacaacgttcaggttccagcctcagcattggggttcag
ggtcctccaggtccacccggacctcctggacccgggtcttttacggtcaacgcgctcatc
gccatgctccagagggaggatgtgaggagatatttgtcaggaccaccagggccacaagga
ccaccgggaccaccaggaacatcagtaggaatttcagccagttacagtgtggacgaaatt
gctacatacgtcttcaatatcatgaacagtagagggatcgctagaggtccacctggacca
cccggccctcctggtccttctggtccttctggtgcaggaggggctggcttcacgaccgca
acgattgactattacgcgttgagcagaaatccagagttccgctcgtggatcagctctaca
acacaacaaggtcctcctgggccgcctggtgtcccagggcaagctggaccccccgggcct
cagggaccaccaggagtgtctgccaccgtctatggggcgggaagtcgtggctacagtttg
gaggacattcagcgttacctgcagagctcagggttcagaggcgttcctggccaacctggt
cctcaaggtccaccagggccgcagggtccaccgggaagctacagcgcaacactggccttc
cctcgggagaagatccgtgctgaagttcaggactatctgttcagtgacaatgttcgtcgc
acatttattgggccgccggggcctcctggaccgaggggtcaaagaggagagcgaggagag
ccggggtacctccacagcgaagcgcagagcctcgcgtcacatcgcagctcagaacgcaga
gagaccaacctgagcaggatctatgagaccatggactactccacggttgccaggagggtc
actgactacatcaggagccaaggcatgctgcaggagaatcagggtgacggtcatctgaag
acctacttacgggtgcatcaaggtccccctggtccccctgggccccccggcccacctggt
tacagccgagtcatcggttcctatggaaacgtcacggcggacctcatggacttctttaga
actcacggcaccatcccaggacctcctggaggtccaggacccaggggagagagagggcac
ccaggacccaaaggagataaaggtgatcagggccagccagggttaccaggactaccaggg
tcgtacactgttcaaattcctcacagagtgcagaagaggcacgcagctgcagacagcgaa
gcgggtggacggtcaaagaagcatctccgtcgcaccagcggtggctaa
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