Takifugu rubripes (torafugu): 101066835
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Entry
101066835 CDS
T02386
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru04382
Cornified envelope formation
tru04510
Focal adhesion
tru04512
ECM-receptor interaction
tru04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
101066835
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
101066835
09142 Cell motility
04820 Cytoskeleton in muscle cells
101066835
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
101066835
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tru04147
]
101066835
00536 Glycosaminoglycan binding proteins [BR:
tru00536
]
101066835
Exosome [BR:
tru04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
101066835
Glycosaminoglycan binding proteins [BR:
tru00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
101066835
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
101066835
NCBI-ProteinID:
XP_029686347
LinkDB
All DBs
Position
22:9362997..9377255
Genome browser
AA seq
1665 aa
AA seq
DB search
MGSSVPAVTLQHVRWTLVLVVMVQQLNAGEIEGPCQGRDCLVCQCLPAKGAQGPPGKPGQ
QGPRGPMGASGHKGPAGTKGRQGAQGLHGPEGLRGARGPDGAPGFLGNNGSSGHPGAGGE
PGLPGLDGCNGKKGPPGVPGSTGLKGVHGPLGLPGPKGKKGEPLFSSVGPGERGRDGEYG
RPGKKGSAGPKGHTGPPGLPGAKGLNGHKGVRGPPGEPGGSFVGDKGDDGEQGPPGPQGQ
EEVIHSPQYTLPPKGYKGDKGLPGPCGPKGMRGSLSEYTETVKGEQGIFGFHGIPGLPGF
PGNNGPPGPEGIPGERGLPGLNGVTGPKGEPGDQGSPGPLEYYKENDVRGPKGDHGHPGS
PGLPGDLGVMGLPGPAGPPGSTVPDRLAITGHRGVPGPKGYKGEPGKYLNLDINSLLGIK
GVKGHRGRKGESGLQGHRACGDYYCEPGFPGEPGDVGPKGPPGFKGVKGWQGECACIPDR
GYPGPPGPEGYNGLPGLPGTPGQKGEPGHKGNEGPRGPPGDQGVPGLYGQKGQKGDLFVA
GIKGTKGDQGFPGNPGIPGATGRPGVDGFPGPIGDQGPPGTGYVGVPGPRGYPGVFGNKG
HPGPAGPPGPGFPGPRGIPGLKGNHGHPGNPGISGHPGPPGETEQCCHELEVGPHGPKGE
PGSPGIPGIQGRDGFQGSEGHPGPKGLKGDDGEIGGTGLPGPQGSNGDPGDPGAFGISLD
GPPGPPGLTGPPGMKGIPGDVISTRPGAPGPPGPPGRAGSKGLHGIPGSPGSQGVPGQVG
RPGYKGEPGLNGDKGATGPQGLSCIICDLHALLGPIGPTGNPGVRGLPGLLGQKGIRGDT
GSTGHGQRGSQGVPGPPGPPGPAGPRGTIGSLGDPGIDGPPGQKGETGYPGRPGLSGLPG
HLGLPGPKGKQGERGFNGRRGPPGHPGVPGKKGLRGPPGLPGPSLLINLGKGPKGLTGRN
GEPGEAGPPGSKGLRGSPGDSGPEGDPGLVGFKGSPGSPGRFGLPGPPGHPGIKGFPGQQ
GYPGDVGDQGDPGPQGQPGISGVTGLKGIKGEPGRSYGKPGPVGPKGLPGDDGPCAPRGS
PGDVGQPGQQGRPGNPGQRGILGEPGRQGGQGFLGPQGPLGNPGVPGYPGDPGILGSPGP
PGPYGPPGPPGPPGLDGLNGLRGEKGMKGTTDIPGPPGPPGLTGVKGVRGQPGLPGPNMP
GPKGQRGPPGETGLPGLPGKPGCPGYKCRLPVAGQNGELGFEGPPGSPGPPGRPGPAGRI
IFIKGNPGPGGLPGLHGCKGQKGLPGPIGSPGYQGLPGPKGGRGPTGPRGPLGPKGPTGV
PGPLGFKGVTGPPGDKGAKGAQGDSIPPVPGVAPVGLPGPNGFPGPVGLPGGTGPPGSPG
PKGEKGHAGFVGFPGLVGPPGPSGPVGDPGDVGQPGFPGPQGIPGPPGDRGGPGHRGKIR
PGFLLVIHSQSVQVPKCPDGSSLLWVGYSLAYLKGQKNAHAQDLGQAGSCLRVFSTMPFS
YCNKAACHFSSRNDKSYWLSTAAPIPMMPVFGQEISSHISRCVVCETVSPAVVFHSQEHT
APACPQGWRSLWTGYSFLMHTGAGDEGSGQALTSSGSCLKNFQTHPIIECQGPQGSCHYF
SNLYSFWLTTISPTEQFKAPRPGTIKAPDRQRSKTSQCHVCLRER
NT seq
4998 nt
NT seq
+upstream
nt +downstream
nt
atggggtcatcagttcctgctgtcacactgcaacatgtcagatggactcttgtacttgtc
gtcatggtgcagcagctcaatgcaggggagatcgagggcccttgtcaagggagagactgt
ttggtgtgtcagtgtctccctgccaaaggagcccagggacctccaggcaagccaggtcaa
caaggccccagaggaccaatgggagcaagtggacacaaggggccagctggaacaaaaggc
cgtcaaggagcacaggggctgcacgggccagaggggttgagaggagcccgtgggccagat
ggggctcctggttttcttggcaataatggctcctcaggccaccctggagcagggggagag
cctggtttaccaggactggatggttgtaatgggaagaaaggtccaccaggagttccagga
tctactggtctgaaaggtgtgcacgggccactgggattacctggaccaaaaggaaagaaa
ggagaacctttattctcttctgtaggacctggggagcgtggtagagatggagaatatggg
cgacctggaaaaaagggaagcgctggaccaaaaggccacactggacctccggggcttcct
ggagctaagggcttgaatgggcataaaggtgtgagaggaccaccaggtgaacctgggggg
tcatttgtaggagacaaaggagacgacggagagcaaggcccacctggtccacaaggccaa
gaagaagtcatccattcccctcaatatacacttccacccaaaggttacaagggagacaaa
ggccttcctggaccatgtggaccaaaaggcatgcgtggtagcctcagtgagtacactgaa
acagttaaaggagagcaaggaatatttggtttccatggcattccgggtcttccgggattt
cctggaaataatggaccaccaggacctgagggtatcccaggagaaagaggccttccaggt
ctcaatggagtaactggaccaaagggtgagccgggagatcagggttctcctggtccccta
gaatactataaagaaaatgatgtcagaggtcctaaaggtgaccatggacatcctggttca
ccaggactgccaggggaccttggggttatgggcctgcctggacctgctggtcctccagga
tcaacggttccagacagacttgctattactggtcaccggggggttcctggtcccaagggc
tacaagggagagccaggaaagtatctcaatttagacatcaattcacttttgggaataaag
ggagtaaaaggacaccgtggacgtaaaggtgaatctggcctccaaggccatcgagcatgt
ggagattactattgtgagcctggtttcccgggggagcctggagatgttggtccaaaaggt
cctcctggatttaagggagtaaaaggttggcagggggaatgtgcatgtattcctgataga
ggttaccctggaccccctggtccagaaggctataatggactaccaggtctacctggaact
ccagggcaaaagggagaaccaggacataaaggaaatgaaggtcccagagggccacctggg
gatcaaggcgttcctggtttatatggacagaaaggtcaaaaaggtgatctctttgttgca
gggattaaaggtaccaagggtgaccaagggtttcctggaaatcctggcattcctggagcg
accggtaggccaggagttgatggcttccctggccccataggagaccaaggccccccaggt
actggatatgttggagtacctggacccagaggttatcctggtgtttttggaaataaagga
catccagggcctgcaggtccaccaggccctggatttcccggtcctaggggtatccctgga
ctaaaaggaaatcacggacatcctggcaatccaggaatttcaggacatccaggtcctcca
ggtgaaactgagcagtgctgtcatgaactggaagttggaccccatggtccaaagggtgag
ccaggttcaccaggcattccaggcatacaaggaagagatggtttccaggggtcagaaggg
catcctggtcctaaaggactgaagggagatgatggtgaaattggagggactggactgcca
ggacctcaagggtcaaatggggatccaggtgacccaggtgcttttggaattagtctggat
ggccctccagggccccctggtttaacaggccctccaggcatgaagggtataccaggagat
gttatttccaccaggcctggtgcccccggcccacctggtccccctggaagagcggggtcc
aaaggacttcatggaattcctggtagcccagggtctcaaggtgtaccaggccaagttgga
agaccaggttacaaaggggagccaggacttaatggggataaaggagccactggtccacaa
ggattatcttgtattatatgtgaccttcatgcccttctaggtccaataggaccaactgga
aatcctggagtgaggggattgccaggtctcctaggtcagaagggaatcaggggagataca
ggttcaaccggtcacggacaaagggggtcacaaggtgttcctggccctcctggtcctcca
ggtccagctggaccaagaggaacaataggctccttaggagatcctggaatagatggtcca
ccaggacagaaaggtgaaacagggtacccgggtaggcccgggttaagtgggttaccaggt
caccttggacttccaggccctaaaggtaaacaaggagagaggggatttaacggccgccga
ggtcccccaggacacccaggagtgcctggtaaaaaaggtttgcgtggtccaccgggatta
ccaggaccatcactgcttataaacttgggaaaaggcccaaaaggacttacaggaagaaat
ggcgaacctggagaagcaggaccaccaggatccaagggcctgagaggatcaccaggggat
tcaggacctgagggagacccaggtttggttggatttaaaggcagccctggttctccgggc
aggtttggactaccaggaccaccagggcatcccggtattaaaggttttcctggtcaacag
gggtatcctggagatgttggtgatcagggagatccaggtccacaaggtcaaccaggtatc
tcaggcgtgactgggttaaaagggattaagggtgaaccagggcgatcctatggaaagcct
ggaccagttggacctaaaggattacctggagatgatggaccctgtgcacctagagggagt
ccaggagatgtaggtcagccaggacaacaagggagaccgggaaatcctggacaacgaggg
attttgggggaaccaggaagacaagggggacaaggttttcttgggcctcaaggcccatta
ggtaatccaggtgttccaggttatccaggtgatcctggcatcctgggatcaccaggtcca
ccaggaccttatgggcctccaggaccacccggaccaccaggccttgatgggctgaatggt
ctgaggggagaaaaaggcatgaaagggactactgatatcccaggccctccgggtccacct
ggtcttactggagttaaaggtgtcagaggccaaccaggactaccaggtcccaatatgcca
gggcccaaaggtcagaggggcccacctggtgagacaggtcttcctggtcttcctggaaaa
cctggttgtcccggctataagtgccgcttaccagtggctggccaaaatggagaacttgga
tttgaaggtcccccaggctccccaggtcctccaggcaggcctggccctgcaggtaggatc
atttttatcaaaggaaaccctggcccaggtggcttgcctggtttacatggttgcaaagga
cagaaaggtctcccaggacctattggctccccaggctaccaaggactcccgggaccaaaa
ggcggtagaggtcctactggtcccaggggtcctctagggccaaaagggccaacaggtgtc
cctggacctttaggctttaagggagttactggcccacctggagacaaaggtgctaagggt
gctcaaggagactccatccccccggtccctggtgtagctccagttggactaccaggacca
aatggttttcctggacctgtgggattaccgggtggcacaggtcctccaggatctccaggc
cctaaaggagagaagggtcatgcaggttttgtaggttttcccggtctagtaggtcctcct
ggtcctagtggtcctgttggggatccaggagatgttggtcaaccaggctttcctggacct
caaggaattccaggtccaccaggtgatcgaggtggaccaggccataggggaaagataagg
ccaggcttcctcttggtaattcacagtcagtcggtccaggtgccaaagtgtcctgatggc
agcagtctgctttgggtgggctacagtctggcctacttgaaaggacaaaagaacgctcac
gctcaagatctgggtcaggctggctcctgcctccgcgttttctcaaccatgcctttctcc
tactgcaacaaagctgcctgtcacttttccagccgcaacgataaatcttactggctctcc
accgccgctcctattcctatgatgccagtttttggccaagaaattagctcccacatcagc
cgctgcgttgtttgcgagacagtttcccctgcagttgtgttccatagccaggagcacaca
gcccccgcatgcccacagggctggaggagtttgtggacgggatactctttcctcatgcac
actggggcaggtgatgagggtagcggacaggctctgacttcttcgggcagctgcttaaag
aattttcagactcaccccatcattgagtgccagggcccacagggatcctgtcactatttt
tcaaacctctacagtttttggctgacgaccattagcccgacagagcaattcaaggcccca
agacccggcaccattaaggcacctgaccgacagcgcagtaagaccagtcaatgtcatgtc
tgccttagagaacgctaa
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integrated database retrieval system
