Takifugu rubripes (torafugu): 101067729
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Entry
101067729 CDS
T02386
Symbol
smarcb1
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03082
ATP-dependent chromatin remodeling
tru03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
101067729 (smarcb1)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
101067729 (smarcb1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tru01009
]
101067729 (smarcb1)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tru03021
]
101067729 (smarcb1)
03036 Chromosome and associated proteins [BR:
tru03036
]
101067729 (smarcb1)
Protein phosphatases and associated proteins [BR:
tru01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
101067729 (smarcb1)
Transcription machinery [BR:
tru03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
101067729 (smarcb1)
SWI/SNF complex
101067729 (smarcb1)
Chromosome and associated proteins [BR:
tru03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
101067729 (smarcb1)
PBAF complex
101067729 (smarcb1)
SWI/SNF complex
101067729 (smarcb1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
101067729
NCBI-ProteinID:
XP_003974590
Ensembl:
ENSTRUG00000007532
LinkDB
All DBs
Position
21:7616473..7619768
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEDGGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAVSISTEPPAYLREQKAKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENASQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEDQADQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgctgagcaagacgtttggacaaaaaccggtgaaatttcagcttgaggatggcggg
gacttttatatgatcggctccgaggtgggaaactaccttcggatgttcagaggctcactg
tataaaagatatccatcattatggagaaaactggcatcagtagaagaaaggaagaaaata
gtggagtcatcacacgatcatggctatacccagcttgcaactagtgtaaccctcctgaag
gcttcagaagttgaggagattctagaaggaaacgatgagaagtacaaagctgtctccatc
agcaccgagccccccgcctacctcagggaacaaaaagcaaagcggaacagtcagtgggtt
ccaacactccccaacagctctcaccatctggacgctgtgccgtgttccaccaccatcaac
cgcagccgactgggccgtgacaaaaagaggactttcccactgtgttttgatgaccatgat
ccagctgtgatccacgaaaatgcatctcaatctgaagttctggttccaatacgcttggac
atggagattgagggacagaagctgagggacgctttcacctggaatatgaacgagaagctg
atgacacctgagatgttcgctgagatcctttgtgacgacctggatcttaacccactggcc
tttgttcccgctattgcctccgccattcgccagcagattgagtcttatccaacagacagc
atcctggaggaccaggcagaccagagggtcattatcaagttgaatatccatgttgggaac
atctctctggtggaccaatttgagtgggacatgtcggagagggaaaactctccagagaag
tttgctctaaagctttgctctgagcttgggctaggcggagagttcgtcacgaccattgcc
tacagcatccgtggtcagctgagttggcaccagaggacgtacgccttcagtgagaaccca
ctgcccactgtggagatcgccatcagaaacacaggagacgctgaccagtggtgccccctg
ctggagaccttgacagatgctgaaatggagaagaagatcagggatcaggacagaaacaca
aggcgaatgagaagactggcaaacacggcccccgcctggtaa
DBGET
integrated database retrieval system
