Takifugu rubripes (torafugu): 101067901
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Entry
101067901 CDS
T02386
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
tru
Takifugu rubripes (torafugu)
Pathway
tru03015
mRNA surveillance pathway
tru03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tru00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
101067901
09123 Folding, sorting and degradation
03018 RNA degradation
101067901
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tru03019
]
101067901
03041 Spliceosome [BR:
tru03041
]
101067901
Messenger RNA biogenesis [BR:
tru03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
101067901
mRNA cycle factors
Stress granule specific factors
101067901
Spliceosome [BR:
tru03041
]
Complex C
Other components
Complex C specific factors
101067901
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RRM_occluded
RRM_10
RBD_RDR6
OB_RNB
POP1_C
DUF6262
Motif
Other DBs
NCBI-GeneID:
101067901
NCBI-ProteinID:
XP_003962598
Ensembl:
ENSTRUG00000005907
LinkDB
All DBs
Position
2:complement(11787692..11794540)
Genome browser
AA seq
653 aa
AA seq
DB search
MNTAAGNYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFS
QPADAERALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFDKYGKTLSVKVMMDPTGKSRGFGFVSYEK
HEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKFEMLKQERISRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRAMPANTIINQFQPTSGYFMPAVPQAQNRTT
YYAPNQLAQMRPNPRWQQQGGRGQGGFQGMPNTLRQPGPRGNMRQMTPNSSSQGPRGVFS
NISFKSFNLTVRRLKMYILLHPGSAQTMAPRPSMGVPGPRNVTPYKYATGVRNPNPQVVQ
PIALQQAQPAVHVQGQEPLTPSMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLL
EIDNSELLHMLESHESLRSKVEEAVAVLQAHQAKKDATQKAGNMAPAAATATS
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atgaatacagcggcggggaattatccgatggcttctctttacgttggcgacctgcacccc
gacatcacggaggctatgttgtacgagaaattcagcccagccggcccggtgctctccatt
cgggtctgcagagacatgatcacccggcgctccctcggatacgcctatgtgaacttctcc
cagcccgctgacgctgagagagccttggacaccatgaactttgacgtggtcaaagggaag
ccgatccggatcatgtggtcccagagagacccctccctcagaaagtccggagtgggcaac
gtgttcatcaagaacctcgacaagtccatcgacaataaagcgctgtacgacactttctct
gcattcggcaacatcctctcctgcaaggtggtgtgtgatgaaaatggatctaaaggctac
gcttttgtccactttgagactcaggacgccgccgaccgtgccatcgagaaaatgaacgga
atgcttctcaatgaccgcaaggtgttcgtgggtcgtttcaaatctcgcaaagaacgggag
gccgagctcggcgccaaagccaaggaattcaccaacgtctacatcaagaacttcggagat
gacatggatgacgagcggctgaaggagctcttcgataaatacgggaagacgctcagtgtg
aaggtcatgatggacccaactggcaaatccagaggcttcggattcgttagttatgagaaa
cacgaggatgctaacaaggccgtagaggacatgaacggcacagagctcaatggcaagacc
gtgtttgtcggtcgggcgcagaagaagaatgagcggcaggcggagctgaagaggaagttt
gagatgctcaaacaagaaaggattagccgttatcagggcgttaatctgtacatcaagaac
ttggacgacaccatagatgatgagaaactccgtaaagaattctctccgtttgggtcgatt
acaagtgccaaggtcatgctggaggagggacgctctaagggcttcgggttcgtctgcttc
tcctctcccgaggaggccaccaaagccgtgactgagatgaacggtcgtatcgttggctcc
aagcccctctacgtagccctcgctcagaggaaagaggagcgcaaagcccacctcaccaac
cagtacatgcagcgtatcgctggcatgagagccatgccagccaataccatcatcaaccag
ttccagcccaccagcggctatttcatgccagcggtcccacaggcccagaatcggaccacg
tactatgcaccaaatcagcttgcccagatgcgtcctaacccccgatggcagcaacaaggt
ggtagaggtcaagggggtttccaagggatgcccaatacactgcggcagccgggaccccgc
ggcaacatgagacagatgactcctaacagcagctcccagggtccccggggtgtgttctcc
aacatttccttcaaatccttcaatcttactgtcagaaggctcaaaatgtacattctgctc
catccaggctcagctcaaactatggctcctcgcccctcaatgggggtccccggcccccgc
aatgtgacaccttacaaatatgccactggcgtgcgtaaccccaaccctcaggtggtgcag
cctatcgccctccagcaagctcagccagctgtgcacgttcagggacaggagcctctcaca
ccctccatgctggctgctgccccccctcaggagcagaaacagatgctaggtgagcgtctt
ttccctctcattcaggccatgcatgctaacctggcaggaaagatcaccggcatgctgctg
gagatcgacaactcggaactgctacacatgttggagtctcacgaatctctacgatcaaag
gtggaagaagcggttgctgtgcttcaagcccatcaggcaaagaaagatgccactcagaaa
gcaggtaacatggcacctgcagctgctactgccacatcctga
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